Job Description P76223 Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012 Rank 62 Aligned Residues 302 % Identity 11% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A	N	L	L
Query Conservation
Alig confidence												.	.	.	.																									.																	.	.	.	.
Template Conservation												.	.	.	.																									.																	.	.	.	.
Template Sequence		D	I	T	V	Y	N	G	Q	Q	K	.	.	.	.	E	A	A	T	A	V	A	K	A	F	E	Q	E	T	G	I	K	V	T	L	N	S	G	K	.	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	.	.	.	.	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L
Template Known Secondary structure									S			.	.	.	.														S											.												G	G	G			.	.	.	.		S					S		G	G	G							T	T		B
Template Predicted Secondary structure												.	.	.	.																									.																	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10					.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	.	.	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	D	F
Query Conservation																																																						.	.
Alig confidence																			.	.	.	.	.	.	.	.																												.	.								.	.
Template Conservation																			.	.	.	.	.	.	.	.																																					.	.
Template Sequence		A	P	I	S	E	Q	T	I	Q	Q	T	A	Q	K	G	V	P	.	.	.	.	.	.	.	.	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	.	.	A	T	P	K	W	K	G	K	I	G	Y	V	S	T	S	G	A
Template Known Secondary structure											T	T			T	T			.	.	.	.	.	.	.	.			T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	.	.	G	S	G	G	G	T	T	T					T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.									.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A	H
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		F	L	E	Q	V	V	A	L	S	K	M	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	V	A	L	N	W	L	K	G	L	K	E	N	G	.	.	.	.	.	K	L	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.				S	S										T	T	S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.																				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	.	.	.	F	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P	D
Query Conservation																				.	.	.
Alig confidence																				.	.	.																																													.	.
Template Conservation																																																																			.	.
Template Sequence		Y	N	L	A	K	E	K	G	V	E	N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S	Y	S	G	A	A	V	L	K	A	S	K	N	Q	A	E	A	Q	K	F	V	D	F	L	A	S	K	K	G	Q	E	A	L	V	A	A	R	.	.	A	E	Y	P	L	R	A	D	V	V	S	P	F
Template Known Secondary structure										G	G	G		S								T	T		G	G	G										B	T	T		S														S											S	.	.							.					T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	R	E	S	L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	A	G	W	V	N	A	L	E	Q	E	W	L	H	R	Y	G
Query Conservation
Alig confidence							.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence		N	L	E	P	Y	.	.	.	.	.	.	E	K	L	E	A	P	V	V	S	A	T	T	A	Q	D	K	E	H	A	I	K	L	I	E	E	A	G
Template Known Secondary structure							.	.	.	.	.	.																										.
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280							.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions