Return to main results Retrieve Phyre Job Id

Job DescriptionP76223
Confidence100.00%DateThu Jan 5 12:20:50 GMT 2012
Rank28Aligned Residues326
% Identity16%Templated1a99a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  GQTVWFNAWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEAN
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Template Sequence  QKTLHIYNWSDYIA. . . . . PDTVANFEKETGIKVVYDVFDSNEVLEGKLMA. . . . . . . GSTGFDLVVPSASFLERQLTAG
Template Known Secondary structure 

TT
S
.....TT

S
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S

BTT
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   2930.........40.. .......50.........60.........70.... .....80.........90......
 
   112.......120.........130.........140.........150.........160... ......170.........180.....
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Query Sequence  LLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTP. . . . . . QPPQTPQALLEFAKANPGTVTY
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Template Sequence  VFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCG
Template Known Secondary structure 
B



GGG
GGGGGB
TTSGGG
S
TT

TTSTSGGG
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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   186...190.........200.........210.........220.........230.........240.........250.........260.....
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Query Sequence  PRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSL
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Template Sequence  VSFLDAPEEVFATVLN. . . . . . . . YLGKDPNSTKADDYTGPATDLLLKLRPNI. . . . . . RYFHSSQYINDLANGDICVAI
Template Known Secondary structure 
S
........TTS
TT


TGGG
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SSTTTS
S
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   177..180.........190.. .......200.........210.........220. ........230.........240..
 
   266...270........ .280.........290.........300.........310.........320.........330.........340...
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Query Sequence  TFNPAHAQQKIAS. . GDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDP
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Template Sequence  GWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAAT
Template Known Secondary structure  T
S



TT

BTT
S
S

SBTTTG
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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   344.....350.........360..... ....370.........380...
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Query Sequence  QKLPDGQRESLQSRMPQDLPPV. . . LAEPHAGWVNALEQEWLH
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Template Conservation                                          
  
Template Sequence  PLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTK
Template Known Secondary structure  GGS
T
TTTS

TT





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   323......330.........340.........350.........360.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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