Job Description P76223 Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012 Rank 24 Aligned Residues 347 % Identity 14% Template c3qufB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 1.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		K	N	E	A	K	G	Q	T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	.	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R
Query Conservation																																					.
Alig confidence																			.	.	.	.															.																												.	.	.	.
Template Conservation																			.	.	.	.																																											.	.	.	.
Template Sequence		T	A	G	G	G	K	T	K	I	S	F	Y	S	Y	F	K	D	.	.	.	.	N	Q	I	G	E	V	V	K	G	F	E	K	K	N	P	D	I	T	L	D	V	Q	Y	G	Q	D	P	A	Q	Y	I	S	T	L	Q	T	R	L	A	G	G	K	.	.	.	.	P	P	T	I	F	N	L	T	X	D	N	R	T
Template Known Secondary structure			G	G	G										S	S			.	.	.	.															T	T									S	S														S	S	S	.	.	.	.			S						T	T	T
Template Predicted Secondary structure																			.	.	.	.																																											.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		T	L	K	E	A	N	L	L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	.	.	.	.	.	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P
Query Conservation																																																												.	.	.	.	.
Alig confidence														.	.	.	.																																											.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		D	V	X	K	S	G	A	A	L	D	I	S	.	.	.	.	G	E	D	F	L	D	G	I	D	D	T	N	F	A	L	F	Q	Q	D	G	K	T	Y	G	X	P	V	S	A	W	V	G	A	F	F	Y	N	K	D	I	L	K	K	A	G	Y	D	K	F	P	K	T	W	D	E	F	I	E	X	G	K	K	I	N
Template Known Secondary structure							T		B				T	.	.	.	.	T		G	G	G	T	T	B		G	G	G	G	G	G	G			T	T					B																			T	T		S	S			S	B
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		181	.	.	.	.	.	.	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		G	T	V	T	Y	P	R	P	P	D	F	T	G	.	.	.	.	.	.	.	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	G	S	T	A	F	L	E	D	F	N	T	Q	I	A	G	S	F	T	G	L	L	A	S	Y	Y	G	E	Q	G	K	S	G	D	L	D	A	D	I	W	S	G	K	S	T	F	T	K	D	W	T	P	V	F	K	R	W	E	A	A	A	K	A	G	V	I	P	Q	K	S	V	G	L	S	A	D	Q	V	K
Template Known Secondary structure			T	T	S								S	S	S	S														T	T	T			S	S	T	T						T	S	S																			T	T	S	S		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	.	.	.	.	.	.	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L
Query Conservation																																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	F	V	S	G	N	L	G	V	X	R	S	G	P	W	D	L	P	D	L	Q	K	S	D	I	D	F	G	V	A	P	F	P	A	Y	S	K	E	D	G	Q	W	I	N	G	G	P	D	Q	G	F	A	I	A	S	R	A	S	D	K	E	K	A	A	A	K	K	F	L	A	Y	L	N	S	E	E	G	L	E
Template Known Secondary structure						T	T									G	G	G							S	S										B	S	S		T	T									S						B	T	T	S																T	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P	D	G	Q	R	E	S	L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	.	.	A	G	W	V	N	A	L	E	Q	E	W	L	H	R	Y
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		A	F	T	S	A	A	G	T	L	S	L	S	S	K	Y	N	A	E	P	P	A	E	L	K	D	V	V	D	N	Y	F	K	Q	N	K	F	Y	W	V	N	W	P	K	S	P	T	V	X	S	T	E	G	I	A	Q	Q	Q	K	I	V
Template Known Secondary structure								T					B	T	T	S															T	G	G	G	T								S	S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions