Phyre 2 alignment of P76223 with c3ombA

Job Description P76223
Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012

Rank 59 Aligned Residues 299

% Identity 9% Template c3ombA_

PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence	K	N	E	A	K	G	Q	.	T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R
Query Conservation								.
Alig confidence								.																																							.																	.	.	.	.
Template Conservation																																															.																	.	.	.	.
Template Sequence	T	T	T	A	D	G	K	P	I	V	T	V	L	V	K	K	N	A	N	Q	E	K	X	A	N	X	Q	W	A	K	D	L	E	A	D	C	D	C	K	I	E	W	Q	E	V	T	.	R	E	A	W	A	Q	Q	K	N	A	T	L	A	S	G	D	.	.	.	.	I	A	D	V	N	L	N	G	Y	G	A	V	E
Template Known Secondary structure		B		T	T			B										T	T	B			G	G	G												T	S									.															T		.	.	.	.			S				S	S			T
Template Predicted Secondary structure																																															.																	.	.	.	.
Template SS confidence
	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.
Predicted Secondary structure																		.	.	.	.																															.	.	.	.	.	.												.	.	.	.
Query SS confidence																		.	.	.	.																															.	.	.	.	.	.												.	.	.	.
Query Sequence	T	L	K	E	A	N	L	L	Q	T	G	W	A	E	T	L	P	.	.	.	.	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	.	.	.	.	.	.	L	T	F	I	A	R	R	D	V	T	P	.	.	.	.	Q	P	P	Q	T	P	Q	A
Query Conservation																		.	.	.	.																															.	.	.	.	.	.												.	.	.	.
Alig confidence																		.	.	.	.																															.	.	.	.	.	.												.	.	.	.
Template Conservation
Template Sequence	A	Y	Q	Y	P	G	X	F	E	D	L	S	K	D	L	D	K	L	P	N	V	K	A	F	F	K	Q	K	P	D	A	K	K	X	S	T	D	S	K	G	R	I	Y	A	I	A	D	G	R	G	K	A	Y	S	G	T	G	Q	H	X	L	I	N	K	A	W	L	D	K	L	G	L	Q	V	P	T	T	W	D	E
Template Known Secondary structure				S	T	T	S	B			G	G	G	G	G	G	G																					T	T	S			S	S							G	G	G		S		S														T						B
Template Predicted Secondary structure
Template SS confidence
	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																									.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	E	N	V	L	K	A	F	K	T	Q	D	P	N	G	N	G	Q	A	D	E	I	P	X	N	I	K	K	L	E	G	S	Y	F	T	W	Y	S	P	X	L	L	L	N	S	T	G	I	V	T	G	F	N	K	G	V	S	E	Y	G	F	Y	A	K	N	G	V	V	K	S	F	L	T	S	D	E	Y	K	E	V
Template Known Secondary structure											S		T	T		S	S	S	S												S	S	S			T	T		G	G	G	G	G	G	G	G	T					T	T	S	S	G	G	G	G	T					T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																		.																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	.	L	R	L	S	L	T	F	N	P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	M	I	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	K	Y	Y	H	K	L	I	S	E	G	L	I	P	A	E	W	A	T	K	D	D	D	A	Y	N	A	D	Q	I	S	D	G	K	T	A	K	T	G	V	V	F	G	W	S	P	S	D	N	F	G	K	L	K	D	Q	Y	I	A	X	P	V	P	S	A	P	G	V	S	P	D	Q	T	V	W	D	G	S	S	S
Template Known Secondary structure										T	T	S	S		T	T	G	G	G												T	T	S	S	S									S							G	G	G	G	G	G								B		T	T			G	G	G								S
Template Predicted Secondary structure
Template SS confidence
	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	E	L	S	P	A	G	L	S	I	S	S	H	A	A	N	K	D	A	A	L	K	L	A	N	L	L	Y	S	E	K	Y	S	V	Q	Q	F
Template Known Secondary structure	S									B	T	T		T	T												T	S
Template Predicted Secondary structure
Template SS confidence
	347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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