Job Description P76223 Confidence 90.82% Date Thu Jan 5 12:20:50 GMT 2012 Rank 87 Aligned Residues 278 % Identity 12% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A	N	L	L
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		N	F	G	I	I	S	T	E	S	S	Q	N	L	K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	T	G	Y	Q	V	K	A	F	F	A	P	D	Y	A	G	I	I	Q	G	X	R	F	.	.	.	.	.	.	.	.	.	D	K	V	D	I	A	W	Y	G	N	K	A	A	X	E	A	V	D	R	A	H	G
Template Known Secondary structure								S	S																					S	S								S	S										T	.	.	.	.	.	.	.	.	.	T	S		S																S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.										80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence		Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	.	.	.	.	.	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P
Query Conservation																																								.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.									.	.	.																			.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																			.	.
Template Sequence		E	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	T	V	A	A	S	G	A	P	G	Y	W	S	L	L	I	A	N	K	.	.	.	D	S	K	I	D	S	L	E	D	X	L	A	N	A	K	S	L	T	.	.	F	G	N	G	D	P
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T			S										T	.	.	.	T		S			S							T	G	G	G			.	.						T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																			.	.
Template SS confidence
		102	.	.																													.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	F	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	A	F	K	R	T	L	N	S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T
Template Known Secondary structure		T		T	T	T	T							T	T	T	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S																T	T	S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																													170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.					.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	.	.	.	.	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q
Query Conservation																																																							.	.	.	.
Alig confidence																							.	.																	.														.	.	.	.
Template Conservation																							.	.																	.
Template Sequence		E	G	X	E	R	L	E	L	T	Q	P	E	K	A	R	Q	L	K	V	I	W	.	.	K	S	P	L	I	P	G	D	P	L	V	W	R	N	N	L	.	S	D	E	Q	K	N	K	L	R	D	F	F	F	K	Y	G	A	N	A	E	Q	K	K	V	L	A	D	L	Q	W	S	K	F	Q	A	S	D	D	D	Q
Template Known Secondary structure																T	T						.	.														T	T	S	.																		S										T	T									G	G	G
Template Predicted Secondary structure																							.	.																	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	P	D	G	Q	R	E	S	L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	A	G	W	V	N	A	L	E	Q	E	W	L	H	R	Y	G	T
Query Conservation
Alig confidence																														.	.	.
Template Conservation																														.	.	.
Template Sequence		L	L	P	I	R	Q	L	E	L	F	K	Q	R	T	D	V	A	N	N	A	N	L	G	A	E	E	K	A	.	.	.	A	K	L	K	A	L	D	E	E	L	A	K
Template Known Secondary structure		G																			T	T	S							.	.	.
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions