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Job DescriptionP76223
Confidence87.60%DateThu Jan 5 12:20:50 GMT 2012
Rank90Aligned Residues219
% Identity16%Templatec3l6gA_
PDB info PDB header:glycine betaine-binding proteinChain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33...... 40.........50.........60.........70.........80.........90.........100.........110
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Query Sequence  QTVWFNA. . WGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEA
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Template Sequence  KKVDLVYMNW. . . . DSEVASINVLTQAMKEHGFDVKTTAL. DNAVAWQTVAN. . . . . . . . . GQADGMVSAWL. . . . . . . .
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   321........330 .........340.........350...... ...360....... ..370........
 
   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  NLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPD
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Template Sequence  . . . . . . . . . . . . . . . . PNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYM. . . NVNSIEDL. . . . TNQANKTITGIEPG
Template Known Secondary structure  ................TTTTGGGTTS...


BGGG
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   379380.........390.........400.........410... ......420. ........430.....
 
   191........200.........210.........220.........230.........240.........250.........260.........270
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Query Sequence  FTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPA
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Template Sequence  AGVMAASEKTLNSYDNLKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . WKLVPSSSGAMTVALGEAIKQHKDIVITGWSPH
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   436...440.........450.... .....460.........470.........480.......
 
   271........280.........290.........300....... ..310.........320.........330.
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Query Sequence  HAQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANA. . . . NASAAAKVVANFLLSPDAQLRKAD
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Template Sequence  WMFNK. . . . . . . YDLKYLADPKGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVML
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   488.490.. .......500.........510.........520.........530.........540.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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