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Job DescriptionP76223
Confidence81.15%DateThu Jan 5 12:20:50 GMT 2012
Rank94Aligned Residues207
% Identity11%Templatec3ix1B_
PDB info PDB header:biosynthetic proteinChain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33..... .40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  QTVWFN. AWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEAN
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Template Sequence  ETVEVMLDWYPNAVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTAS. . . . . . . . . GAIPLALSYQPDVILARSKD
Template Known Secondary structure 
SSSS
GGGTTTT

SSTTT.........TS
S
TT
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   31........40.........50.........60.........70.........80. ........90.........100.
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  LLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . LPVVSVASVVRSPLNHVMFLAE. . . QDFDSPADL. . . . . . . . . VGLTVGYPGI
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S

B
TT...T

SSGGGG.........TTS
S
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   102.......110.........120... ......130.. .......140..
 
   192.......200.........210.........220.........230.........240.........250.........260.........270.
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Query Sequence  TGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAH
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Template Sequence  PVNEPILKTMVEAAG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GDYEQVHLMDVGFELGASIVSGRADAVVGTYINH
Template Known Secondary structure  TTTT...............................

GGG

TT
TTS
S
S
BTTT
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   143......150....... ..160.........170.........180.........190.
 
   272.......280.........290.........300....... ..310........
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Query Sequence  AQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANA. . NASAAAKVVAN
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Template Sequence  EYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWR
Template Known Secondary structure  TT


GGGTT




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   192.......200.........210.........220.........230.........240
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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