Job Description P76223 Confidence 99.86% Date Thu Jan 5 12:20:50 GMT 2012 Rank 67 Aligned Residues 301 % Identity 12% Template c3cg3A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.80 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																										.
Query SS confidence															.																																																										.
Query Sequence		A	K	G	Q	T	V	W	F	N	A	W	G	G	.	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	.	N	G	E	N	F	R	T	L
Query Conservation															.																																																										.
Alig confidence															.																														.	.																.	.	.	.								.
Template Conservation																																													.	.																.	.	.	.
Template Sequence		S	R	E	A	R	L	I	I	F	H	A	G	S	L	S	I	P	L	S	Q	V	E	E	K	F	T	K	Y	A	Q	E	K	L	G	V	K	V	T	F	Q	D	E	A	.	.	S	G	S	V	K	A	V	R	K	V	T	D	L	K	K	.	.	.	.	R	A	D	I	V	A	V	A	D	Y	T	L	I	P	Q	L
Template Known Secondary structure													G	G	G																														.	.												T	S			.	.	.	.			S					S	S	T	T
Template Predicted Secondary structure																																													.	.																.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		K	E	A	N	L	L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	.	.	.	.	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V
Query Conservation																																																												.	.	.	.
Alig confidence																																																												.	.	.	.
Template Conservation
Template Sequence		M	I	P	N	Y	T	D	F	Y	V	L	F	A	T	N	E	I	V	I	A	F	T	N	K	S	K	Y	A	D	E	M	L	K	N	P	D	K	W	Y	E	I	L	S	R	P	D	V	S	F	G	F	S	D	P	N	Q	D	P	C	G	Y	R	S	V	M	V	M	K	L	A	E	L	Y	Y	G	R	P	I	F	K
Template Known Secondary structure		T	T	T	T	T		S																T	T	S	T	T								G	G	G					T	T		T	T								T	T	T																				S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	P	R	P	P	D	F	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L
Query Conservation
Alig confidence														.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	V	E	K	T	T	N	I	Y	S	N	.	.	.	.	.	.	G	T	R	I	Y	A	P	K	E	I	I	I	K	D	K	R	V	I	M	R	P	K	E	T	D	L	V	G	L	V	E	S	.	.	.	.	.	.	.	.	.	G	S	L	D	Y	I	F	I	Y	K	S	V	A	K	Q	H	H	L	S	Y	I
Template Known Secondary structure				T	T	T	T	B	S					.	.	.	.	.	.	T	T						S	S			B	S	S	T	T					S	S	T									T	.	.	.	.	.	.	.	.	.	T	S	S													T	T
Template Predicted Secondary structure														.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.										.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		264	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		S	L	.	.	T	F	N	P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		T	L	P	D	D	I	N	L	G	D	F	N	K	A	D	F	Y	G	R	V	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	V	Y	G	I	T	V	L	K	N	A	P	N	R	E	L	A	I	E	F	L	R	F	L	L	G	N	E	G	R	K	I	F	E	D	N	Y	Q	E	F	L	S	P	P	V
Template Known Secondary structure					T	T	T	S	S			G	G	G					T	T						T	T	T																	T	T		T	T													S										T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		342	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	Q	K	L	P	D	G	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	G	N	V	P	P	E	I	R
Template Known Secondary structure					S			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions