Job Description P76223 Confidence 99.87% Date Thu Jan 5 12:20:50 GMT 2012 Rank 66 Aligned Residues 282 % Identity 11% Template c3cfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.70 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																														.																																							.
Query SS confidence																														.																																							.
Query Sequence		T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	.	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	.	N	G	E	N	F	R	T	L	K	E	A	N
Query Conservation																														.																																							.
Alig confidence															.	.	.													.											.									.	.	.						.	.	.	.								.
Template Conservation															.	.	.																								.									.	.	.						.	.	.	.
Template Sequence		V	L	K	I	F	H	A	G	S	L	S	V	P	.	.	.	F	E	E	Y	E	K	M	F	E	K	E	H	P	N	V	D	V	E	R	E	P	A	G	.	S	V	A	C	V	R	K	I	.	.	.	I	D	L	G	K	.	.	.	.	K	A	D	I	L	A	S	A	D	Y	S	L	I	P	Q	M	M	M	P	K
Template Known Secondary structure									G	G	G				.	.	.													T	T										.									.	.	.		T	S			.	.	.	.			S					S	S	T	T						T	T	T	T
Template Predicted Secondary structure															.	.	.																								.									.	.	.						.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.				.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		L	L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	.	D
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		Y	A	D	W	Y	V	M	F	A	R	N	E	I	V	L	A	Y	T	D	K	S	K	Y	K	D	E	I	N	S	T	N	W	Y	K	I	L	Q	R	P	D	V	K	I	G	F	S	N	P	N	D	D	P	C	G	Y	R	T	Q	M	V	L	Q	L	A	E	L	Y	Y	K	D	P	T	I	Y	D	N	L	V	L	K
Template Known Secondary structure		T		S																T	T	S	T	T	T	T	T			T	T	T					T	T	S	T	T								T	T	T																			T		T	T						T	G	G
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.
Template Sequence		H	S	N	I	K	V	E	E	N	N	G	T	Y	L	I	L	V	P	K	E	L	D	V	D	T	N	K	L	F	V	R	S	K	E	T	D	L	L	A	P	L	E	A	G	A	.	.	.	.	.	.	.	.	.	F	D	Y	L	F	I	Y	K	S	V	A	N	Q	H	H	L	K	Y	I	E	L	P	K	E	I	N
Template Known Secondary structure		G	B	S							T	T								S	S			B		T	T	T					S	S	G	G	G	G						T	T	S	.	.	.	.	.	.	.	.	.	S	S												T	T								T	T	T	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.										.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	.	.	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P
Query Conservation																								.	.
Alig confidence																								.	.																																	.	.	.
Template Conservation																																																										.	.	.
Template Sequence		L	G	Y	Y	E	Y	A	D	T	Y	K	K	V	A	L	K	I	I	A	K	N	K	T	I	N	A	K	P	I	V	Y	G	M	T	V	P	T	N	A	P	H	K	K	E	A	I	E	F	V	K	F	V	L	G	H	P	.	.	.	E	V	L	E	N	N	G	Q	P	A	I
Template Known Secondary structure		S			G	G	G					T	T						G	G	G	T																T	T		T	T															T	.	.	.					T	T	T			B
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions