Job Description P76223 Confidence 99.89% Date Thu Jan 5 12:20:50 GMT 2012 Rank 65 Aligned Residues 283 % Identity 14% Template c3cfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate Resolution 1.60 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																																							.
Query SS confidence																																.																																							.
Query Sequence		G	Q	T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	.	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	.	N	G	E	N	F	R	T	L	K	E
Query Conservation																																.																																							.
Alig confidence															.	.	.															.											.									.	.	.						.	.	.	.								.
Template Conservation															.	.	.																										.									.	.	.						.	.	.	.
Template Sequence		G	E	V	L	T	V	F	H	A	G	S	L	S	.	.	.	V	P	F	E	E	L	E	A	E	F	E	A	Q	H	P	G	V	D	V	Q	R	E	A	A	G	.	S	A	Q	S	V	R	K	I	.	.	.	T	E	L	G	K	.	.	.	.	K	A	D	V	L	A	S	A	D	Y	A	L	I	P	S	L	M	V
Template Known Secondary structure											G	G	G		.	.	.														S	T	T										.									.	.	.		T	S			.	.	.	.			S					S	S	T	T						T	T
Template Predicted Secondary structure															.	.	.																										.									.	.	.						.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.				.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.
Query Sequence		A	N	L	L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	.	.	.	.	.	.	.	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T
Query Conservation																																																								.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	Y	A	D	W	Y	A	.	.	.	.	.	.	.	.	.	.	A	F	A	R	N	Q	M	I	L	A	Y	T	N	E	S	K	Y	G	D	E	I	N	T	D	N	W	Y	E	I	L	R	R	P	D	V	R	Y	G	F	S	N	P	N	D	D	P	A	G	Y	R	S	Q	M	V	T	Q	L	A	E	S	Y	Y
Template Known Secondary structure		T	T	T		S				.	.	.	.	.	.	.	.	.	.													T	T	S	T	T	T	T	T			T	T	T							S	T	T								T	T	T																		T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.											.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	Y	P	R	P	P	D	F	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		N	D	D	M	I	Y	D	D	L	M	L	A	N	T	G	M	T	L	T	T	E	E	N	G	T	A	L	I	H	V	P	A	S	E	E	I	S	P	N	T	S	K	I	M	L	R	S	M	E	V	E	L	S	S	A	L	E	T	G	E	I	D	Y	.	.	L	Y	I	Y	R	S	V	A	E	Q	H	G	F	E	Y
Template Known Secondary structure		T		T	T						T	G	G	G	S	S							T	T	S									G	G	G					T	T	T					S	S	G	G	G	G						T	T	S		S		.	.												T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		L	S	L	T	F	N	P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	.	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P
Query Conservation																																	.
Alig confidence																																	.																																								.
Template Conservation																																																																									.
Template Sequence		V	A	L	P	P	A	I	D	L	S	S	L	E	Y	A	D	N	Y	S	K	V	Q	V	E	M	V	N	G	E	V	V	T	G	S	P	I	V	Y	G	V	T	I	P	N	N	A	E	N	S	E	L	A	T	E	F	V	A	L	L	L	G	E	T	G	Q	Q	I	F	I	E	N	.	G	Q	P	P	I
Template Known Secondary structure						T	T	T	S	S			G	G	G					T	T						T	T	S																T	T		S														S										T	.	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions