Job Description P76223 Confidence 56.46% Date Thu Jan 5 12:20:50 GMT 2012 Rank 103 Aligned Residues 129 % Identity 9% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		34	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure											.																				.		.
Query SS confidence											.																				.		.
Query Sequence		T	V	W	F	N	A	W	G	G	.	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	.	A	.	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A
Query Conservation											.																				.		.
Alig confidence											.																				.		.													.													.	.	.	.	.
Template Conservation																																														.													.	.	.	.	.
Template Sequence		D	L	K	F	G	M	N	A	G	T	S	S	N	E	Y	K	A	A	E	M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	.	D	D	R	A	M	L	K	Q	L	K	D	G	.	.	.	.	.	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E
Template Known Secondary structure								S	S		T	T	S																	T	T	T	S								T	T	T	T		.												T	.	.	.	.	.	S								G	G	G	G	G	G	T	S	G	G
Template Predicted Secondary structure																																														.													.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		111	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		N	L	L	Q	T	G	W	.	.	.	.	.	.	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	P	Q	T	P	Q	A	L
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																																											.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		A	A	V	F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F	G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	N	G	T	R	Q	T	T	S	N	.	.	.	.	R	A	I	N	S	I	A	D	M
Template Known Secondary structure		G	G	G	G	G	S	T	T	T	S		S										S	S																																S	.	.	.	.	S				S	G	G	G	G
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions