Job Description P76223 Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012 Rank 35 Aligned Residues 348 % Identity 12% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																					.											.
Query SS confidence																																					.											.
Query Sequence		K	N	E	A	K	G	Q	T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	.	A	I	N	L	K	I	V	R	L	A	.	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F
Query Conservation																																					.											.
Alig confidence																																					.											.																		.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		T	D	D	G	G	V	V	N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	.	.	.	.	A	P	D	L	A	Q	V	G	Y	A	E	L
Template Known Secondary structure						S														T	T	S															T	T									S	S		G	G	G												T		.	.	.	.			S						T	T	T
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		R	T	L	K	E	A	N	L	L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	.	.	.	.	.	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N
Query Conservation																																																													.	.	.	.	.
Alig confidence																							.	.																																					.	.	.	.	.
Template Conservation																							.	.
Template Sequence		P	E	V	F	T	K	G	L	L	Q	D	V	T	Q	Y	A	E	Q	Y	K	N	.	.	D	F	A	S	G	P	Y	S	L	V	Q	V	G	G	K	A	Y	G	L	P	Q	D	T	G	P	L	V	Y	F	Y	N	K	A	E	F	E	K	L	G	I	T	E	I	P	Q	T	A	D	E	F	I	A	A	A	K	T	A
Template Known Secondary structure							T	T		B											G	G	.	.	G	B							T	T			T	T											B													T	T			S				B
Template Predicted Secondary structure																							.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		P	G	T	V	T	Y	P	R	P	P	D	F	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	.	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A
Query Conservation																																						.
Alig confidence																																						.																															.	.
Template Conservation																																																																					.	.
Template Sequence		A	A	A	G	K	Y	I	M	S	Y	Q	P	D	E	A	G	N	M	I	S	G	L	A	G	A	S	G	G	W	Y	K	V	K	G	D	S	W	V	V	N	T	E	T	D	G	S	K	A	T	A	D	F	Y	Q	Q	L	L	D	A	K	A	A	T	T	N	P	R	.	.	W	D	P	S	F	D	A	S	I	K	D
Template Known Secondary structure				T	T		B	S		B			G	G	G	T	T	T								T	T			S					T	T																								T	T		S	B				T	.	.	T	S									T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.								.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																											.											.	.	.	.	.	.	.
Query SS confidence																											.											.	.	.	.	.	.	.
Query Sequence		G	T	L	R	L	S	L	T	F	N	P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	.	S	S	Y	S	F	G	F	R	E	G	.	.	.	.	.	.	.	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A
Query Conservation																											.											.	.	.	.	.	.	.
Alig confidence																											.											.	.	.	.	.	.	.																																					.
Template Conservation																																																																																	.
Template Sequence		G	S	L	I	G	T	V	A	A	A	W	E	A	P	L	F	M	T	S	S	G	G	T	G	S	G	E	W	Q	V	A	Q	L	G	D	W	F	G	N	A	G	K	T	G	P	D	G	G	S	A	V	A	V	L	K	N	S	K	H	P	K	E	A	M	E	F	L	D	W	F	N	T	Q	V	P	D	L	V	S	.
Template Known Secondary structure		T		B							G	G	G								T	T	T	T	T	T	T	T								B		S	S		T	T		B		B									B	T	T		S														T								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.						.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P	D	G	Q	R	E	.	.	.	.	.	S	L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	A	G	W	V	N	A	L	E	Q	E	W	L	H	R	Y
Query Conservation																								.	.	.	.	.
Alig confidence		.	.																					.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	Q	G	L	V	P	A	A	T	T	E	D	A	E	T	P	S	E	W	S	T	F	F	G	G	Q	D	I	M	K	E	F	K	T	A	N	N	N	M	G	D	F	T	Y	M	P	G	F	S	A	V	A	A	K	M	N	E	T	A
Template Known Secondary structure		.	.	T	T				S	B		S	S												T	T	T													T	B							T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions