Return to main results Retrieve Phyre Job Id

Job DescriptionP76223
Confidence100.00%DateThu Jan 5 12:20:50 GMT 2012
Rank17Aligned Residues338
% Identity12%Templatec2vgqA_
PDB info PDB header:immune system/transportChain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card
Resolution2.1 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  WFNAWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQT
Query Conservation      

               
    



  
          

     

       

              
 
  
Alig confidence 

































...















....






















Template Conservation   
 

         
 
    


 




    ... 
    

    


 .... 



             
 
 
Template Sequence  KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEH. . . PDKLEEKFPQVAATGD. . . . GPDIIFWAHDRFGGYAQSGLLAE
Template Known Secondary structure  S

TTS
S


...
TTTTT
....S
SGGGTT
B

Template Predicted Secondary structure 







...





....









Template SS confidence 















































































   6...10.........20.........30......... 40.........50..... ....60.........70........
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  GWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTA
Query Conservation 
                        
  
 

       
 



     
 
 


   
                   
Alig confidence 


...









































































Template Conservation 
  ...     
            


 



       
 






  
 




   
 


  
            
Template Sequence  ITP. . . DKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPY
Template Known Secondary structure 


...
TTB
TTT
S

TTT
SS

SBGGGTT




SS
Template Predicted Secondary structure 


...




















Template SS confidence 















































































   7980. ........90.........100.........110.........120.........130.........140.........150.....
 
   196...200.........210..... ....220.........230.........240.........250.........260.........270....
Predicted Secondary structure 










.



















Query SS confidence 



















.


























































Query Sequence  FLEQLLIMLTPDPAALKEAP. DDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQ
Query Conservation                      .               
  
                        
               
Alig confidence 



















.


























































Template Conservation       
   

          
       

    

    

   
              
  

 

 
 
 
     
Template Sequence  FTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNI
Template Known Secondary structure  TT
TTTTSTTSS
TT

TTS
GGG
Template Predicted Secondary structure 





























Template SS confidence 















































































   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   275....280......... 290.........300.........310........ .320.........330.........340.........350.
Predicted Secondary structure 






..









.













Query SS confidence 














. .




























.
































Query Sequence  KIASGDLPASSYSFG. . FREGMIGNVHFVTIPANANASAAAKVVAN. FLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQR
Query Conservation                 ..             
   
 
 


  

 . 
 
 
 
                   
     
Alig confidence 














..




























.














..















Template Conservation          
   
   
       
     
 
 


 


  

   
 
 
         ..                
Template Sequence  DTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK. . PLGAVALKSYEEELAK
Template Known Secondary structure  T




BBTTB



BTT
S
TTSSS..


SBTT
Template Predicted Secondary structure 























..











Template SS confidence 















































































   236...240.........250.........260.........270.........280.........290....... ..300.........310...
 
   352.......360.........370.........380.....
Predicted Secondary structure 








Query SS confidence 

































Query Sequence  ESLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRY
Query Conservation                               
    
Alig confidence 

































Template Conservation   
               
  
        
   
Template Sequence  DPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAV
Template Known Secondary structure  SS


STT
Template Predicted Secondary structure 












Template SS confidence 

































   314.....320.........330.........340.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions