Job Description P76223 Confidence 100.00% Date Thu Jan 5 12:20:50 GMT 2012 Rank 43 Aligned Residues 313 % Identity 12% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L	K	E	A	N	L	L
Query Conservation
Alig confidence														.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.																															.	.	.	.	.	.	.
Template Sequence		V	L	Y	L	Y	N	W	T	Y	Y	T	P	.	.	.	.	.	T	S	L	I	K	K	F	E	Q	Q	Y	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	.	.	.	.	.	.	.	S	I	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L
Template Known Secondary structure									T	T	T	S		.	.	.	.	.												T									S										.	.	.	.	.	.	.	S	S	S			S		S					B										T	T
Template Predicted Secondary structure														.	.	.	.	.																															.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.						20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P	R	P	P	D	F	T	G
Query Conservation
Alig confidence																						.																																							.	.
Template Conservation																						.																																							.	.
Template Sequence		E	K	I	D	L	S	K	I	P	N	V	Q	F	I	K	E	S	V	R	A	.	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	Y	A	R	T	W	S	I	F	.	.	S	R	K	D	L	A	Y	R	M	S	M	M	D	D	M	R	E	V	M
Template Known Secondary structure						G	G	G		G	G	G	G	G	B							.			T	T	S	T	T		S	S															T	T	T			S			S	S	G	G	G	G	.	.	G		G	G	G	T	T	S					S
Template Predicted Secondary structure																						.																																							.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T	F	N	P	A	H	A	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																				.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																				.
Template Sequence		G	A	A	L	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Y	N	V	N	T	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	V	K	F	.	.	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	.	F	A	E	A	F	F
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T																		T	G	G	G					.	.		S	S	S								T	S		S					.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																				.
Template SS confidence
		153	.	.	.	.	.																.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	N	A	S	A	A	A	K	V	V	A	N	F	L	L	S	P	D	A	Q	L	R	K	A	D	P	A	V	W	G	D	P	S	V	L	D	P	Q	K	L	P	D	G	Q	R	E	S
Query Conservation
Alig confidence																																																																													.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	S	P	V	Y	V	D	S	F	C	I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N	F	F	L	E	P	A	H	Y	A	E	F	L	D	T	F	G	F	P	S	T	I	H	R	E	A	A	A	Y	Q	K	.	.	.	.	K
Template Known Secondary structure				S		G	G	G	G	G	G							T	T	T	T									B			T	T		S													T	S												T				S	S	B	T	T	G	G	G	G			.	.	.	.	S
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		L	Q	S	R	M	P	Q	D	L	P	P	V	L	A	E	P	H	.	A	G	W	V	N	A	L	E	Q	E	W	L	H
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		T	P	Y	Y	S	E	H	D	L	E	R	G	T	L	K	T	D	V	G	A	A	I	E	H	Y	N	A	H	W	N	A
Template Known Secondary structure				S	S		G	G	G	G	S	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions