Job Description P76223 Confidence 67.09% Date Thu Jan 5 12:20:50 GMT 2012 Rank 99 Aligned Residues 242 % Identity 12% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		E	A	K	G	Q	T	V	W	F	N	A	W	G	G	D	T	A	I	N	R	Y	L	D	W	V	S	G	E	M	K	T	H	Y	A	I	.	N	L	K	I	V	R	L	A	D	A	A	D	A	V	K	R	I	Q	T	E	A	A	A	G	R	K	T	G	G	S	V	D	L	L	W	V	N	G	E	N	F	R	T	L
Query Conservation																																					.
Alig confidence																															.						.																									.	.	.	.	.
Template Conservation																															.																															.	.	.	.	.
Template Sequence		A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	.	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	.	.	.	.	.	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I
Template Known Secondary structure				S		S								S	S	G	G	G									T	T			.			T	T		T	T							S													G	G	G	T	.	.	.	.	.	S		S						T
Template Predicted Secondary structure																															.																															.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		K	E	A	N	L	L	Q	T	G	W	A	E	T	L	P	N	W	R	Y	V	D	T	Q	L	P	V	R	E	D	F	S	V	P	T	Q	G	A	E	S	P	W	G	G	A	Q	L	T	F	I	A	R	R	D	V	T	P	.	Q	P	P	Q	T	P	Q	A	L	L	E	F	A	K	A	N	P	G	T	V	T	Y	P
Query Conservation																																																										.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	M	G	T	V	T	D	G	K	P	T	P	M	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M
Template Known Secondary structure					T	T	S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							B	S								G	G	G	G	G	G				S			T	T							T	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.																							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	P	D	F	T	G	T	A	F	L	E	Q	L	L	I	M	L	T	P	D	P	A	A	L	K	E	A	P	D	D	A	T	F	A	R	V	T	A	P	L	W	Q	Y	L	D	V	L	H	P	Y	L	W	R	E	G	K	D	F	P	P	S	P	A	R	M	D	A	L	L	K	A	G	T	L	R	L	S	L	T
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V
Template Known Secondary structure		S	S	T	T	S													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	T	B							G	G	G							T	T	S		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																															.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.								.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																											.	.												.	.	.	.	.	.	.
Query SS confidence																																											.	.												.	.	.	.	.	.	.
Query Sequence		F	N	P	A	H	A	Q	Q	K	I	A	S	G	D	L	P	A	S	S	Y	S	F	G	F	R	E	G	M	I	G	N	V	H	F	V	T	I	P	A	N	A	.	.	N	A	S	A	A	A	K	V	V	A	N	.	.	.	.	.	.	.	F	L	L	S	P	D	A	Q	L	R	K	A	D
Query Conservation																																											.	.												.	.	.	.	.	.	.
Alig confidence																.	.	.																									.	.												.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	.	.	.	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q
Template Known Secondary structure			T	T									T	S		.	.	.						G	G	G	T	B	T	T		B																																			G	G	G
Template Predicted Secondary structure																.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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