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Job DescriptionP76223
Confidence89.79%DateThu Jan 5 12:20:50 GMT 2012
Rank89Aligned Residues264
% Identity17%Templatec2f5xC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd
Resolution1.72 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32....... 40.........50.........60.........70.........80.........90.........100.........110
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Query Sequence  GQTVWFNA. WGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEA
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Template Sequence  ERPVNXVVPFAAGGPTDNVARSLAESXRPTLGETVVVENKGGAGGTIGTTQVA. . . . RAQPDGYSILLXHAGFSTAPSLY
Template Known Secondary structure  SS
SS
TTSSS



GGG....TS
SSSSTGGGT
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   4.....10.........20.........30.........40.........50...... ...60.........70.........
 
   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  NLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPD
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Template Sequence  KNPGYE. . . . . . . . . . . . . . . . . . . . . PYTSFEPIGLVVDVPXTIIARGDF. . . PPNNIKELAEYVKKNADKISLANAGI
Template Known Secondary structure  S

SS
.....................TTTSTT
...S

SGGG
S
T
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   80..... ....90.........100......... 110.........120.........130.....
 
   191........200.........210.........220.........230.........240.........250.........260.........270
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Query Sequence  FTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPA
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Template Sequence  G. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AASHLCGTXLVEALGVNLLTIPYKGTAPAXNDLLGKQVDLXCD. QTT
Template Known Secondary structure  T................................ST



SSTTSS
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   136 ...140.........150.........160.........170......... 180..
 
   271........280.........290... ......300......... 310.........320.........330.
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Query Sequence  HAQQKIASGDLPASSYSFGFREG. . . . . . . . . . . . . . . . MIGNVHFVTIPANANA. . . SAAAKVVANFLLSPDAQLRKAD
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Template Sequence  NTTQQITSGKVKAYAVTSLKRVPTLPDLPTXDESGYKGFEVGIWHGXWAPKGTPKPVVDKLVKSLQAGLADPKFQERXKQ
Template Known Secondary structure  TS
SSS

TTSTTS
BTTTTT
TT


TT


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   183......190.........200.........210.........220.........230.........240.........250.........260..
 
   332.......340.........350......
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Query Sequence  PAVWGDPSVLDPQKLPDGQRESLQS
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Template Sequence  LGAEVLTNEANPEALQAKVKQQVPQ
Template Known Secondary structure  TT

GGG
S
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   263......270.........280.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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