Job Description P07604 Confidence 98.20% Date Thu Jan 5 11:00:21 GMT 2012 Rank 147 Aligned Residues 130 % Identity 11% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.																				.	.	.
Query SS confidence																																														.	.	.	.	.	.	.																				.	.	.
Query Sequence		P	E	P	V	L	S	V	D	M	K	S	K	V	D	M	A	N	P	A	S	C	Q	L	F	G	Q	K	L	D	R	L	R	N	H	T	A	A	Q	L	I	N	G	F	N	.	.	.	.	.	.	.	F	L	R	W	L	E	S	E	P	Q	D	S	H	N	E	H	V	V	I	.	.	.	N	G	Q	N	F	L	M
Query Conservation																																														.	.	.	.	.	.	.																				.	.	.
Alig confidence																																														.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		R	I	F	T	T	T	H	T	P	N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P	V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L
Template Known Secondary structure										T	T	S	B						T	T						S							T	T	S	B	T	G	G	G	B		T	T	T	T	T													T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	T	P	V	Y	L	Q	D	E	N	D	Q	H	V	L	T	G	A	V	V	M	L	R	S	T	I	R	M	G	R	Q	L	Q	N	V	A	A	Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P
Query Conservation
Alig confidence																.																												.	.	.	.	.	.	.	.	.
Template Conservation																.																												.	.	.	.	.	.	.	.	.
Template Sequence		D	T	S	W	S	S	F	I	N	P	W	S	R	K	.	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	D	V	F	A	A	P	P	C	P	E	.	.	.	.	.	.	.	.	.	P	S	V	Q	E	L	T	E	Q	I	H	R	L	L	M	Q	P	V	P
Template Known Secondary structure											T	T	T			.															S	S	S		T	T	S			S	S			.	.	.	.	.	.	.	.	.														T	T	S
Template Predicted Secondary structure																.																												.	.	.	.	.	.	.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.										450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions