Job Description P07604 Confidence 99.26% Date Thu Jan 5 11:00:21 GMT 2012 Rank 50 Aligned Residues 204 % Identity 15% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220											.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	.	.	.	.	.	.	.	.	.	.	Q	K	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A
Query Conservation																												.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		L	S	E	K	P	N	V	K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	.	.	.	A	N	S	T	F	F	S	V	S	S	S
Template Known Secondary structure										S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	.	.	.	T	T
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.												.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																												.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	P	E	D	A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	.	.	.	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	.	.	.	.	.	.	.	.	.	.	.	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H
Query Conservation																												.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.															.	.	.																		.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																																																							.	.	.	.	.	.	.	.
Template Sequence		D	L	V	S	K	W	M	.	.	.	.	.	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	.	.	.	.	.	.	.	.	G	V	G	N	D	S
Template Known Secondary structure				T	T	T	S	S	.	.	.	.	.	S	S		T	T	T										T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	.	.	.	.	.	.	.	.	S	T	T	T	T	S
Template Predicted Secondary structure									.	.	.	.	.																																																							.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.					.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																	.																							.	.	.	.
Query SS confidence																																	.																							.	.	.	.
Query Sequence		V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	.	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	.	.	.	.	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T
Query Conservation																																	.																							.	.	.	.
Alig confidence														.	.	.	.	.	.	.													.																							.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		Q	G	V	L	V	L	G	A	T	N	I	P	.	.	.	.	.	.	.	W	Q	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	T	M	F	E	I	N	V	G	D	T	P	C	V	L	T	K	E	D	Y	R	T	L	G	A	M	T	E	G	Y	S	G	S	D	I	A
Template Known Secondary structure			S								S			.	.	.	.	.	.	.	T	T	S																															T	T	S															T		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	V	K	D	A	L	M	Q	P	I	R	K	I	Q	S
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions