Job Description P07604 Confidence 99.66% Date Thu Jan 5 11:00:21 GMT 2012 Rank 21 Aligned Residues 211 % Identity 14% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		R	Q	L	Q	N	V	A	A	Q	D	V	S	A	F	S	Q	.	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E
Query Conservation																		.
Alig confidence																		.																	.	.
Template Conservation																																			.	.
Template Sequence		Q	L	S	L	P	V	H	L	P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S
Template Known Secondary structure											T	T		S	T	T	T	S																	.	.	T		S		S							S	T	T	S	S															T	T								G	G	G	G	G	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																						.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.
Query Sequence		D	A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	.	.	.	.	.	.	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N
Query Conservation																																						.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	T	A	L	L	E	G	L	E	Q	F	D	.	.	.	.	.	.	.	.	.	.	.	.	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	L	I	V	S	A	S	A	S
Template Known Secondary structure		S		G	G	G	G	T	T	G	G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.						T	G	G	G	G	T	T																				S	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.													.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	.	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N
Query Conservation																					.
Alig confidence								.	.	.											.														.	.	.	.	.	.	.	.	.																												.
Template Conservation								.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template Sequence		P	X	E	A	G	F	.	.	.	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	.	.	.	.	.	.	.	.	.	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	.	X	A	R	D	L	R	T	L	F	D
Template Known Secondary structure		T	T	T	T	T		.	.	.												S										G	G	G	.	.	.	.	.	.	.	.	.												T	T															.	T	T	T
Template Predicted Secondary structure								.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		148	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.
		422	.	.	.	.	.	.	.	430	.			.	.	.	.	.	.	.	.	440
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		A	I	Y	R	A	L	T	Q	L	D	.	.	G	Y	E	L	R	P	Q	D	I
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		V	L	D	R	L	D	K	A	S	X	V	H	Q	R	K	L	T	I	P	F	V
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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