Job Description P07604 Confidence 98.92% Date Thu Jan 5 11:00:21 GMT 2012 Rank 103 Aligned Residues 220 % Identity 14% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.												.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	.	.	.	.	.	.	.	.	.	.	.	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A	V	E	S	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																																										.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	.	.	.	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													.	.	.	T	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.				.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E
Query Conservation
Alig confidence											.	.																																	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation											.	.																																	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		E	R	A	V	R	Q	V	F	Q	.	.	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	.	.	.	.	.	.	.	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	.	.	.	.	.	.	.	D	I	I	D	P
Template Known Secondary structure											.	.					T		S							T		T	T	T				T	T										.	.	.	.	.	.	.		T			S	T	T									S		G	.	.	.	.	.	.	.	G	G	S
Template Predicted Secondary structure											.	.																																	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		660	.	.	.	.	.	.	.	.			.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.								.	720	.	.	.
		355	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure										.																																																					.																	.	.
Query SS confidence										.																																																					.																	.	.
Query Sequence		D	L	Y	Y	R	L	N	V	.	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	.	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	.	.
Query Conservation										.																																																					.																	.	.
Alig confidence										.											.	.	.	.	.	.																																					.																	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	.	.	.	.	.	.	A	D	R	L	A	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I	C	A	L	R
Template Known Secondary structure					S	T	T	S	S								S				.	.	.	.	.	.											T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G	S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.							.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
			431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	G	Y	E	L	R	P	Q	D	I	L	L	P	D	Y	D	A	A	T	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure							B										T	T
Template Predicted Secondary structure
Template SS confidence
		807	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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