Job Description P07604 Confidence 98.92% Date Thu Jan 5 11:00:21 GMT 2012 Rank 102 Aligned Residues 222 % Identity 17% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																												.	.	.	.	.	.
Query SS confidence																																		.	.																												.	.	.	.	.	.
Query Sequence		Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	.	.	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	.	.	.	.	.	.	P	Y	L	A	L	N	C	A	S	I	P	E	D
Query Conservation																																		.	.																												.	.	.	.	.	.
Alig confidence																																		.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	D	Y	V	P	D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	R	H	R	E	T	P
Template Known Secondary structure		S	T	T				S			T	T											T	T	G	G	G	T	S	S										B		T	T	S	S																				T										T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	.	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	.	.	.	.	.	.	.	.	.	.	R	I	N	Q	E	L
Template Known Secondary structure													S					S	S																T	T	S		S								T	T	T					S	T	T										.	.	.	.	.	.	.	.	.	.		G	G	G
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.											.	170	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	.	.	T	R	Y
Query Conservation																																																																													.	.
Alig confidence												.	.	.	.																										.	.															.	.	.	.	.																.	.
Template Conservation												.	.	.	.																										.	.															.	.	.	.	.
Template Sequence		V	S	L	V	G	I	T	N	S	L	.	.	.	.	G	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	.	.	A	P	Q	L	R	D	I	L	E	T	R	A	E	E	.	.	.	.	.	A	F	N	P	G	V	L	D	P	D	V	V	P	L	C	A	A	L	A	A
Template Known Secondary structure									S		S	.	.	.	.	T	T	S	S	S	S						T	T	T	T	S					B					.	.															.	.	.	.	.		B		T	T	T	B		S	S
Template Predicted Secondary structure												.	.	.	.																										.	.															.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	.	.	.	D	G	Y	E	L	R	P	Q	D	I
Query Conservation																						.	.	.
Alig confidence																						.	.	.
Template Conservation
Template Sequence		R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	E	E	R	V	R	R	E	H	V
Template Known Secondary structure		S	S	S																				T	T		S		B
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions