Job Description P07604 Confidence 99.12% Date Thu Jan 5 11:00:21 GMT 2012 Rank 73 Aligned Residues 208 % Identity 24% Template c2r65A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex Resolution 3.30 Å

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		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.											.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	.	.	.	.	.	.	.	.	.	.	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S
Query Conservation																														.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		A	E	K	P	N	V	R	F	K	D	M	A	G	N	E	E	A	K	E	E	V	V	E	I	V	D	F	L	K	Y	P	E	R	Y	A	N	L	G	A	K	I	P	K	G	V	L	L	V	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	G	E	.	.	.	A	H	V	P	F	F	S	M	G	G	S	S
Template Known Secondary structure									G	G	G	S		S							T	T									S						T	T	T					S							S	S	S	S	S												.	.	.		T								T	G	G
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.														.	.	.	.	.
Query SS confidence																											.	.	.														.	.	.	.	.
Query Sequence		I	P	E	D	A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	.	.	.	N	G	G	S	V	L	L	D	E	I	G	E	M	.	.	.	.	.	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C
Query Conservation																											.	.	.														.	.	.	.	.
Alig confidence								.	.	.	.	.															.	.	.														.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Template Sequence		F	I	E	M	F	V	.	.	.	.	.	G	L	G	A	S	R	V	R	D	L	F	E	T	A	K	K	Q	A	P	S	I	I	F	I	D	E	I	D	A	I	G	K	N	D	E	R	E	Q	T	L	N	Q	L	L	A	E	M	D	G	.	.	.	.	.	.	.	.	F	G	S	E	N	A	P	V	I	V	L	A
Template Known Secondary structure		G	G	S			S	.	.	.	.	.	S	S		S	T	T											T		S						T	T	G	G	G	T						S	T	T	T	S	S	S					T	T		.	.	.	.	.	.	.	.		S		S	S	S
Template Predicted Secondary structure								.	.	.	.	.																																																		.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.	.
		338	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.
Predicted Secondary structure							.	.	.																																																																				.	.
Query SS confidence							.	.	.																																																																				.	.
Query Sequence		A	T	Q	K	N	.	.	.	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	.	.	Y	A	W
Query Conservation							.	.	.																																																																				.	.
Alig confidence							.	.	.													.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																						.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	N	R	P	E	I	L	D	P	A	L	M	R	P	G	R	F	D	R	.	.	.	.	.	.	.	Q	V	L	V	D	K	P	D	F	N	G	R	V	E	I	L	K	V	H	I	.	.	.	.	.	.	.	.	.	.	.	.	K	G	V	K	L	A	N	D	V	N	L	Q	E	V	A	K	L	T	A	G	L
Template Known Secondary structure				S		T	T	S	S		G	G	G	G	S	T	T	S	S			.	.	.	.	.	.	.						S															.	.	.	.	.	.	.	.	.	.	.	.	T	T	S				S													S
Template Predicted Secondary structure																						.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.								.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.													.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	.	.	.	D	G	Y	E	L	R	P	Q	D	I
Query Conservation																				.	.	.
Alig confidence				.	.															.	.	.
Template Conservation				.	.
Template Sequence		A	G	.	.	A	D	L	A	N	I	I	N	E	A	A	L	L	A	G	R	N	N	Q	K	E	V	R	Q	Q	H	L
Template Known Secondary structure			S	.	.																				S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		377	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions