Job Description P07604 Confidence 98.89% Date Thu Jan 5 11:00:21 GMT 2012 Rank 113 Aligned Residues 215 % Identity 19% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270
Predicted Secondary structure																													.	.																			.	.	.	.	.	.	.	.																					.	.
Query SS confidence																													.	.																			.	.	.	.	.	.	.	.																					.	.
Query Sequence		F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	.	.	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	.	.	.	.	.	.	.	.	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	.	.	E	D	A
Query Conservation																													.	.																			.	.	.	.	.	.	.	.																					.	.
Alig confidence																													.	.																			.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		F	K	E	I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N	C	R	E	V	G	G	T	P	Q	A
Template Known Secondary structure			S	S		T	T																	T	T												T	T	S	S																			S	S	S	S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.															.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	.	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	S	S	L	A	G	K	L	T	G	F	S	V	P	K	H	G	I	N	L	G	E	Y	I	D	K	I	K	N	G	T	R	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	I	V	L	Y	Q	L	L	R	.	.	.	.	.	.	.	.	.	.	.	S	D	A	N	I	S	V
Template Known Secondary structure													S				S	S	S	S		T												S	S	S								T	T						S	T	T	S									T	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170												.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	.	.	T	R	Y	A	W	P
Query Conservation																																																																										.	.
Alig confidence											.	.	.	.														.											.	.														.	.	.	.	.																.	.
Template Conservation											.	.	.	.														.											.	.														.	.	.	.	.
Template Sequence		I	M	I	S	N	D	I	N	V	.	.	.	.	R	D	Y	M	E	P	R	V	L	S	S	L	G	.	P	S	V	I	F	K	P	Y	D	A	.	.	E	Q	L	K	F	I	L	S	K	Y	A	E	Y	.	.	.	.	.	G	L	I	K	G	T	Y	D	D	E	I	L	S	Y	I	A	A	I	S	A	K	E	H
Template Known Secondary structure						S	S	T	T	T	.	.	.	.	T	T	T	S							T			.											.	.														.	.	.	.	.	T	S		T	T	S			S												T	T
Template Predicted Secondary structure											.	.	.	.														.											.	.														.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	D	.	G	Y	E	L	R	P	Q	D	I
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S	G	G	G	I	I	R	K	E	H	V
Template Known Secondary structure																		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions