Job Description P07604 Confidence 97.85% Date Thu Jan 5 11:00:21 GMT 2012 Rank 158 Aligned Residues 94 % Identity 13% Template c2pdtD_ PDB info PDB header:circadian clock protein Chain: D: PDB Molecule:vivid pas protein vvd; PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid Resolution 2.20 Å

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		89	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																				.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	E	P	V	L	S	V	D	.	.	.	M	K	S	K	V	D	M	A	N	P	A	S	C	Q	L	F	G	Q	K	L	D	R	L	R	N	H	T	A	A	Q	L	I	N	G	F	N	F	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	E	S	E	P	Q	D	S	H
Query Conservation											.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	C	A	L	I	L	C	D	L	K	Q	K	D	T	P	I	V	Y	A	S	E	A	F	L	Y	M	T	G	Y	S	N	A	E	V	L	G	R	N	C	R	F	L	Q	S	P	D	G	M	V	K	P	K	S	T	R	K	Y	V	D	S	N	T	I	N	T	M	R	K	A	I	D	R	N	A	E	V	Q	V	E
Template Known Secondary structure		T	T	S	S						T	T	S	T	T																		S	T	T	T	T	T	S		G	G	G	G	G	S	T	T	S				T	T				S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	H	V	V	I	N	G	Q	N	F	L	M	E	I	T	P	V	Y	L	Q	D	E	N	D	Q	H	V	L	T	G	A	V	V	M	L	R	S
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		V	V	N	F	K	K	N	G	Q	R	F	V	N	F	L	T	M	I	P	V	R	.	.	D	E	T	G	E	Y	R	Y	S	M	G	F	Q	C	E
Template Known Secondary structure							T	T															.	.		T	T	S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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