Job Description P07604 Confidence 99.21% Date Thu Jan 5 11:00:21 GMT 2012 Rank 57 Aligned Residues 138 % Identity 20% Template c2kjqA_ PDB info PDB header:replication Chain: A: PDB Molecule:dnaa-related protein; PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b. Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		197	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		A	Q	D	V	S	A	F	S	Q	.	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A	V	E	S	E	L
Query Conservation											.
Alig confidence											.															.	.	.	.	.																																													.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.																																													.	.	.	.	.	.	.
Template Sequence		H	M	D	Y	P	S	F	D	K	F	L	G	T	E	N	A	E	L	V	Y	V	L	R	H	.	.	.	.	.	K	H	G	Q	F	I	Y	V	W	G	E	E	G	A	G	K	S	H	L	L	Q	A	W	V	A	Q	A	L	E	A	G	K	N	A	A	Y	I	D	A	A	S	M	P	L	.	.	.	.	.	.	.
Template Known Secondary structure													S			T										.	.	.	.	.				S						S	S	S	T	T	T	T													T	T	T								T	T	T	S			.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.																																													.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	T	D	A	A	F	E	A	E	Y	L	A	V	D	Q	V	E	K	L	G	N	E	E	Q	A	L	L	F	S	I	F	.	.	.	.	.	.	.	.	.	.	N	R	F	R	N	S	G	K	G	F	L	L	L	G	S	E	Y	T	P	.	.	.	Q	Q	L	V	I	R	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		G	G	G	G	G		S						S	T	T				S											.	.	.	.	.	.	.	.	.	.							T									S	S		T	.	.	.	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
												78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.
		356	.	.	.	360	.		.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	Y	Y	R	L	N	.	V	L	T	L	N	L	P	P
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		L	R	T	R	M	A	Y	C	L	V	Y	E	V	K	P
Template Known Secondary structure						G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions