Job Description P07604 Confidence 99.33% Date Thu Jan 5 11:00:21 GMT 2012 Rank 45 Aligned Residues 205 % Identity 19% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A	V	E	S	E	L	F	G	H	A	P	E
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I	K	E	F
Template Known Secondary structure		S	G	G	G			S														.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.	V	S	R	I	I	E	P	I	Q	S	R	C	A
Template Known Secondary structure			T	S			S	T	T		S								T	G	G	G	S															.	.	.	.	.	.	.	.	.	.	.		T	T	T								S		.	.	.	.	.	.	.	G	G	G	S							T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	D	G	Y	E	L	R	P	Q	D	I
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.																		.	.	.															.																		.	.
Template Conservation										.	.	.	.	.	.	.	.																		.	.	.															.																		.	.
Template Sequence		V	F	R	F	K	P	V	P	.	.	.	.	.	.	.	.	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	.	.	.	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	I	.	.	G	E	V	V	D	A	D	T	I
Template Known Secondary structure										.	.	.	.	.	.	.	.																T		.	.	.															.	T	T														T	T	.	.		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																		.	.	.															.																		.	.
Template SS confidence
		155	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions