Job Description P07604 Confidence 98.45% Date Thu Jan 5 11:00:21 GMT 2012 Rank 140 Aligned Residues 233 % Identity 14% Template c1w5sB_ PDB info PDB header:replication Chain: B: PDB Molecule:origin recognition complex subunit 2 orc2; PDBTitle: structure of the aeropyrum pernix orc2 protein (adp form) Resolution 2.4 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence		Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	.	.	.	.	.	.	.	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	.	.	.	.	.	.	S	P	R	A	G	K	P	Y	L	A	L	N	C	A
Query Conservation																																		.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	N	Y	I	P	P	E	L	R	V	R	R	G	E	A	E	A	L	A	R	I	Y	L	N	R	L	L	S	G	A	G	L	S	D	V	N	M	I	Y	G	S	I	G	R	V	G	I	G	K	T	T	L	A	K	F	T	V	K	R	V	S	E	A	A	A	K	E	G	L	T	V	K	Q	A	Y	V	N	A	F
Template Known Secondary structure		S	T	T				S	S		S	S	S	S																	T													T	T			S	S	S																			T	T										G	G
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		S	I	P	E	D	A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	.	.	.	.	.	.	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																		.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	A	P	N	L	Y	T	I	L	S	L	I	V	R	Q	T	G	Y	P	I	Q	V	R	G	A	P	A	L	D	I	L	K	A	L	V	D	N	L	Y	V	E	N	H	Y	L	L	V	I	L	D	E	F	Q	S	M	L	S	S	P	R	I	A	A	E	D	L	Y	T	L	L	R	V	H	E	E	I	P	.	.	.
Template Known Secondary structure		G			S													T						T	T																		T									S	T					S		T	T	S										T					S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D
Query Conservation
Alig confidence		.	.																									.	.	.																					.	.
Template Conservation		.	.																									.	.	.																					.	.
Template Sequence		.	.	S	R	D	G	V	N	R	I	G	F	L	L	V	A	S	D	V	R	A	L	S	Y	M	R	.	.	.	E	K	I	P	Q	V	E	S	Q	I	G	F	K	L	H	L	P	A	Y	K	.	.	S	R	E	L	Y	T	I	L	E	Q	R	A	E	L	G	L	R	D	T	V	W	E	P	R	H	L	E	L	I
Template Known Secondary structure		.	.		T	T	S													T								.	.	.								T	T		S										.	.																B		G	G	G
Template Predicted Secondary structure		.	.																									.	.	.																					.	.
Template SS confidence
				173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		L	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	.	.	.	D	G	Y	E	L	R	P	Q	D	I
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		S	D	V	Y	G	E	D	K	G	G	D	G	S	A	R	R	A	I	V	A	L	K	M	A	C	E	M	A	E	A	M	G	R	D	S	L	S	E	D	L	V
Template Known Secondary structure							G	G	G	T	S																			G	G	G	T		S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions