Job Description P07604 Confidence 98.93% Date Thu Jan 5 11:00:21 GMT 2012 Rank 101 Aligned Residues 201 % Identity 16% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A	V	E	S	E	L	F	G	H	A	P	E
Query Conservation
Alig confidence																												.	.
Template Conservation																												.	.
Template Sequence		T	L	D	E	V	Y	G	Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	.	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	Y	S	N	M	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	K	D	F
Template Known Secondary structure		S	G	G	G			S														T	T					.	.						S	S	S	S	S														T	T	S										T	T	S			S						T
Template Predicted Secondary structure																												.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	.	.	.	.	.	.	.	.	.	.	.	Y	T	K	N	T	R	F	C	V	L	A	N	Y	A	H	K	L	T	P	A	.	.	.	.	.	.	.	L	L	S	Q	C	T
Template Known Secondary structure				S			S	S	S		S							T	T	G	G	G	S															.	.	.	.	.	.	.	.	.	.	.	T	T	T	T								S		G	G	G	S				.	.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.												.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	D	G	Y	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		R	F	R	F	Q	P	L	P	Q	E	A	.	.	.	.	.	.	.	.	.	.	.	I	E	R	R	I	A	N	V	L	V	H	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	.	G	D	M	R	R	V	L	N	V	L	Q	S	C	K	A	T	L	D	N	P	D
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.											T	T	T			B													T	.	T									T	T	T	T	T	T	T	T		S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions