Job Description P07604 Confidence 98.91% Date Thu Jan 5 11:00:21 GMT 2012 Rank 105 Aligned Residues 192 % Identity 19% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		T	N	L	Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	G	Y	D	.	.	.	I	L	E	Q	N	A	S	D
Template Known Secondary structure		S	S	G	G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	T			.	.	.						T	T	S
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.	.	380	.
		266	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure				.																											.	.	.	.	.														.	.	.
Query SS confidence				.																											.	.	.	.	.														.	.	.
Query Sequence		I	P	.	E	D	A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	N	G	G	.	.	.	.	.	S	V	L	L	D	E	I	G	E	M	S	P	R	.	.	.	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I
Query Conservation				.																											.	.	.	.	.														.	.	.
Alig confidence				.																											.	.	.	.	.														.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	.	.	.	.	.	.	.	.	.	.	.	T	S	T	P	L	I	L	I
Template Known Secondary structure											T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T												.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.												.	.	.	.	.	.	.	450
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	.	.	.	.	.	.	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y
Query Conservation																																											.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																			.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Sequence		C	N	E	R	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	F	K	.	.	.	L	D	P	N	V	I	D	R	L	I	Q	T
Template Known Secondary structure			S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	G	G	G	T	T	T	S																									T			.	.	.			T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template SS confidence
		455	.	.	.	.	460																							.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.				.	.	500	.	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	D	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		T	.	R	G	D	I	R	Q	V	I	N	L	L	S	T	I	S	T	T	T	K	T
Template Known Secondary structure		T	.	T	T										T						S	S
Template Predicted Secondary structure			.
Template SS confidence
		510		.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions