Job Description P07604 Confidence 100.00% Date Thu Jan 5 11:00:21 GMT 2012 Rank 1 Aligned Residues 255 % Identity 41% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	G	R	Q	L	Q	N	V	A	A	Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	R	K	E	N	E	L	L	R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I
Template Known Secondary structure																T	T								S														T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		P	E	D	A	V	E	S	E	L	F	G	H	A	P	E	G	.	.	.	.	.	.	.	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T
Template Known Secondary structure													B		T	T	S	S	T	T			S		B							T	T	T	S						S	G	G	G																S					B	T			S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	R	E	L
Template Known Secondary structure		S	S								T	T	S	S									T	T								G	G	G																				T	T																	S			T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	A	I	Y	R	A	L	T	Q	L	D	G	Y	E	L	R	P	Q	D	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	V	I	E	R	A	V	L	F	S	E	G	K	F	I	D	R	G	E	L	S
Template Known Secondary structure														S	S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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