Job Description P07604 Confidence 99.64% Date Thu Jan 5 11:00:21 GMT 2012 Rank 22 Aligned Residues 204 % Identity 18% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																														.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.
Query Sequence		D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	A	M	L	.	.	.	.	.	.	.	.	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A
Query Conservation																														.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																															.	.	.
Template Sequence		A	S	Y	I	M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F
Template Known Secondary structure		T	T	T		T	T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.											.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	.	.	.	N	G	G	S	V	L	L	D	E	I	G	E	M	S	.	.	.	.	.	.	.	.	.	.	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C
Query Conservation																						.	.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.						.	.	.															.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																																													.	.	.	.	.	.	.	.
Template Sequence		S	E	T	A	K	C	Q	A	M	K	K	.	.	.	.	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	.	.	.	.	.	.	.	.	K	A	P	P	Q	G	R	K	L	L	I	I	G
Template Known Secondary structure													.	.	.	.							T	S	S													T	T		B	T	T	T	T	B													T	T	.	.	.	.	.	.	.	.				S	T	T
Template Predicted Secondary structure													.	.	.	.																																													.	.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.					.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.									.	.	.	.	.	.	.	.	640	.	.	.	.
		338	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		A	T	Q	K	.	.	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	N
Query Conservation						.	.
Alig confidence						.	.															.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Sequence		T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	T	T	.	.	.	.	.	.	.	.	.	I	H	V	P	N	I	A	T	G	E	Q	.	.	.	.	.	.	.	.	.	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G
Template Known Secondary structure				S								T	T	G	G	G	T	S	S			.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.									T		S													T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template SS confidence
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.										.	.	.	.	.	670	.	.	.	.	.										.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	D	G	Y	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	K	L	L	M	L	I	E	M	S	L	Q	M	D	P	E	Y	R	V
Template Known Secondary structure													T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions