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Job DescriptionP07604
Confidence98.29%DateThu Jan 5 11:00:21 GMT 2012
Rank144Aligned Residues174
% Identity21%Templatec1jr3E_
PDB info PDB header:transferaseChain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   211........220......... 230.........240.........250....... ..260....
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Query Sequence  PKMKHVVEQAQKLAMLSAP. . . LLITGDTGTGKDLFAYACHQASPRAGKP. . . . . . . . . . . . . . . . . . . . . YLALNCA. .
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Template Sequence  PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG
Template Known Secondary structure  TTTTTTTS


S

TTSST
SS

SSS

S
STS

SS


TT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   265....270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  . . SIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN
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Template Sequence  KNTLGVDAVREVTEKLNEHARLG. . . . . GAKVVWVTDAALLTDAAANALLKTLEE. . . . . . . . . . . PPAETWFFLATRE.
Template Known Secondary structure  SSSB
SS

TTS.....S
S
GGGB
S...........

TTS
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   85....90.........100....... ..110.........120.........130.... .....140.......
 
   343......350.........360.........370.........380.........390.........400.........410.........420..
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Query Sequence  LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNA
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Template Sequence  . . . . . . PERLLATLRSRCRLHYLAPPPEQYAVTWL. . . . . . . . . . . . . . . . SREVTMSQDALLAALRLS. AGSPGAALAL
Template Known Secondary structure  ......STTS
TTTTTTS




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   148.150.........160.........170...... ...180.........190.... .....200....
 
   423.
Predicted Secondary structure 
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Query Sequence  IY
Query Conservation 
 
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Template Conservation 
 
Template Sequence  FQ
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 

   205.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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