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Job DescriptionP07604
Confidence99.03%DateThu Jan 5 11:00:21 GMT 2012
Rank86Aligned Residues207
% Identity21%Templatec1iy2A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent metalloprotease ftsh; PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   197..200.........210.........220... ......230.........240.........250.........260......
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Query Sequence  AQDVSAFSQIVAVSPKMKHVVEQAQKL. . . . . . . . . . AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASI
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Template Sequence  EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE. . . ARVPFITASGSDF
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GGGSSS

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   149150.........160.........170.........180.........190.........200.........210.. .......220.....
 
   267..270.........280.........290 .........300... ......310.........320.........330.......
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Query Sequence  PEDAVESELFGHAPEGKKGFFEQA. . . NGGSVLLDEIGEM. . . . . . SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC
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Template Sequence  VEMFVGVGAARVRD. . . . . LFETAKRHAPCIVFIDEIDAVGRKNDEREQTLNQLLVEM. . . . . . . . . DGFEKDTAIVVMA
Template Known Secondary structure  STTT.....TS
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   226...230......... 240.........250.........260.........270........ .280.........290.
 
   338.340.. .......350.........360.........370.........380.........390.........400.........410....
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Query Sequence  ATQKN. . . LVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPG
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Template Sequence  ATNRPDILDPALLRPGRFDR. . . . . . . QIAIDAPDVKGREQILRIHA. . . . . . . . . . . . RGKPLAEDVDLALLAKR. TPG
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   300.........310......... 320.........330......... 340.........350...... ...
 
   415....420.........430 .........440
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Query Sequence  . NVRQLKNAIYRALTQL. . . DGYELRPQDI
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Template Sequence  FVGADLENLLNEAALLAAREGRRKITMKDL
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   360.........370.........380.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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