Job Description P75853 Confidence 100.00% Date Thu Jan 5 12:15:02 GMT 2012 Rank 12 Aligned Residues 269 % Identity 16% Template d2nxoa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.04

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		27	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		E	A	L	R	I	G	Y	Q	K	.	.	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E
Query Conservation											.	.
Alig confidence											.	.																.	.	.	.	.								.
Template Conservation																												.	.	.	.	.								.
Template Sequence		T	R	P	R	V	G	H	I	Q	F	L	N	C	L	P	L	Y	W	G	L	A	R	T	G	T	L	.	.	.	.	.	L	D	F	E	L	T	K	.	D	T	P	E	K	L	S	E	Q	L	V	R	G	D	L	D	I	G	P	V	T	L	V	E	F	L	K	N	A	D	D	L	V	A	F	P	D	I	A	V	G
Template Known Secondary structure											S	G	G	G										T	S	G	G	.	.	.	.	.	G	G						.												T	T	S		S												T	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.								.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		C	D	G	P	V	M	S	C	V	I	V	S	Q	.	.	.	.	V	P	L	D	R	L	D	G	A	R	V	A	L	G	S	T	S	R	T	S	V	R	L	A	Q	L	L	L	S	E	R	F	G	V	Q	P	D	Y	Y	T	C	P	P	D	L	S	L	M	A	A	V	L	I	G	D	A	A	L	R	A	N	M	I
Template Known Secondary structure			S	S			S	S						S	.	.	.	.	S		T	T	S		S	S	S						T	T		S													T	S													S	S																	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		185	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	Y	Y	S	A	A	L	L	Q	G	.	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M	G	L	P	A	P	V	I	A
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		D	G	P	R	Y	G	L	D	V	H	D	L	G	A	L	W	K	E	W	T	G	L	P	F	V	F	A	V	W	A	A	R	R	D	Y	A	E	R	E	P	V	I	T	R	K	V	H	E	A	F	L	A	S	R	N	L	S	L	E	E	V	E	K	V	A	E	Q	A	A	R	W	E	A	F	D	E	D	T	L	A
Template Known Secondary structure						T	T															S																																							T										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R	L	V	P	K	K	V	D	I	R	Q	R	I	W	Q	P
Query Conservation
Alig confidence											.	.	.	.																														.	.
Template Conservation											.	.	.	.																														.	.
Template Sequence		K	Y	F	T	T	L	D	F	R	.	.	.	.	F	G	A	P	Q	L	E	A	V	T	E	F	A	R	R	V	G	P	T	T	G	F	P	A	D	V	K	V	E	.	.	L	L	K	P
Template Known Secondary structure							S	B			.	.	.	.		S															S	T	T	T	T	S		T	T					.	.	B
Template Predicted Secondary structure											.	.	.	.																														.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions