Job Description P75853 Confidence 99.95% Date Thu Jan 5 12:15:02 GMT 2012 Rank 16 Aligned Residues 257 % Identity 16% Template d2czla1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.55

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		28	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	L	R	I	G	Y	.	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P
Query Conservation								.
Alig confidence								.																			.	.	.							.
Template Conservation																											.	.	.							.
Template Sequence		A	L	R	L	G	F	S	P	P	N	D	T	F	I	F	Y	A	L	V	H	G	R	V	E	S	.	.	.	P	V	P	L	E	P	.	V	L	E	D	V	E	T	L	N	R	W	A	L	E	G	R	L	P	L	T	K	L	S	Y	A	A	Y	A	Q	V	R	D	R	Y	V	A	L	R	S	G	G	A	L	G	R
Template Known Secondary structure																					T	T	S	S			.	.	.	S	S					.														T	T			S										T	T		T	T	T					S	S	S					S
Template Predicted Secondary structure																											.	.	.							.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y
Query Conservation
Alig confidence			.									.	.	.	.	.																														.	.	.	.	.	.
Template Conservation			.									.	.	.	.	.																														.	.	.	.	.	.
Template Sequence		G	.	V	G	P	L	V	V	A	R	.	.	.	.	.	G	P	L	Q	A	L	E	G	L	R	V	A	V	P	G	R	H	T	T	A	Y	F	L	L	S	L	Y	A	Q	.	.	.	.	.	.	G	F	V	P	V	E	V	R	Y	D	R	I	L	P	M	V	A	Q	G	E	V	E	A	G	L	I	I	H	E	S
Template Known Secondary structure		S	.								S	.	.	.	.	.	S			S			T	T						S		T	T	S											S	.	.	.	.	.	.	S								G	G	G							T	T	S	S	S						T	T
Template Predicted Secondary structure			.									.	.	.	.	.																														.	.	.	.	.	.
Template SS confidence
		80		.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																																																					.
Query SS confidence																			.	.	.	.	.	.																																																					.
Query Sequence		Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	.	.	.	.	.	.	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M	.	G	L	P	A
Query Conservation																			.	.	.	.	.	.																																																					.
Alig confidence																			.	.	.	.	.	.																													.	.	.																						.
Template Conservation																																																					.	.	.
Template Sequence		R	F	T	Y	P	R	Y	G	L	V	Q	V	V	D	L	G	A	W	W	E	E	R	T	G	L	P	L	P	L	G	A	I	L	A	R	R	D	L	G	E	G	L	I	R	A	L	D	E	A	V	R	.	.	.	R	S	V	A	Y	A	L	A	H	P	E	E	A	L	D	Y	M	R	A	H	A	Q	E	L	S	D
Template Known Secondary structure					G	G	G	G	T																S	S											G	G	G														.	.	.									S	G	G	G	G									T	T	S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R	L	V	P	K	K	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	I	W	A	H	V	H	T	Y	V	N	A	F	S	L	D	V	G	E	E	G	E	R	A	V	A	R	L	F	A	E	A	E	A	R	G	L	A	A	P	S	P	R
Template Known Secondary structure													S																								T	T	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions