Job Description P75853 Confidence 99.77% Date Thu Jan 5 12:15:02 GMT 2012 Rank 26 Aligned Residues 250 % Identity 16% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

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		25	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure											.													.																																																				.	.	.	.	.	.
Query SS confidence											.													.																																																				.	.	.	.	.	.
Query Sequence		S	P	E	A	L	R	I	G	Y	.	Q	K	G	S	I	G	M	V	L	A	K	S	.	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	.	.	.	.	.	.
Query Conservation											.													.																																																				.	.	.	.	.	.
Alig confidence											.													.																																																				.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	E	F	I	T	I	G	S	G	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q	N	D	I	A	Y	Y	A	Y	Q	G	C	C	I	P	A	F	E	G
Template Known Secondary structure													T	T	S	S																T	S	S									S											T	T	S		S															T		S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
						97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.																																								.																								.
Query SS confidence		.	.	.	.																																								.																								.
Query Sequence		.	.	.	.	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	.	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	.	Q	P	T	Y	L	T	P	A	D	A	R	A
Query Conservation		.	.	.	.																																								.																								.
Alig confidence		.	.	.	.												.	.																											.																								.
Template Conservation																	.	.
Template Sequence		K	P	V	K	T	I	R	A	L	A	A	L	Y	P	E	.	.	V	V	H	V	V	A	R	K	D	A	G	I	R	T	V	A	D	L	K	G	K	R	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	L	E	A	Y	G	L	T	F	D	D	L	G	Q	A	I	R	V	S	A	S	Q	G	I	Q
Template Known Secondary structure					T	T											.	.								T	T	S	S		S	S	G	G	G	G	T	T	S							T	T														T	T			G	G	G	S	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.																									210	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	Q	Q	G	N	V	D	A	W	A	I	W	.	.	.	.	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	.	.	.	.	.	.	G	T	D	L	N	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	Y	L	A	A	R
Query Conservation															.	.	.	.																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																			.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	Q	D	K	R	A	D	A	L	F	Y	T	V	G	L	G	A	S	A	I	Q	Q	L	A	L	T	T	P	I	A	L	V	A	V	D	L	N	R	I	Q	A	I	A	K	K	Y	P	F	Y	V	G	F	N	I	P	G	G	T	Y	K	G	V	D	V	T	T	P	T	V	A	V	Q	A	M	L	I	A	S	E
Template Known Secondary structure					T	T	S		S								T	T											S														T	T	T	T	T		T	T								T	T	S	B	T	T	B		S															T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R
Query Conservation
Alig confidence				.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation				.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		R	L	.	.	.	S	E	E	T	V	Y	K	F	M	K	A	V	F	G	N	L	E	A	F	K	K	I	H	P	N	L	E	R	F	F	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	V	K	G	L	P	I	P	L	H	P	.	.	.	.	.	.	.	G	A	E	R	F	Y	K	E	A	G
Template Known Secondary structure		T	S	.	.	.														S	S						T	T												.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T		S	S		B			.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure				.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		255	.				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.														290	.	.	.	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.
		297	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions