Job Description P75853 Confidence 99.95% Date Thu Jan 5 12:15:02 GMT 2012 Rank 18 Aligned Residues 229 % Identity 18% Template d1p99a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.70

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	.	.	.	A	G	A	D	L	V	Y	V	G	V	E
Query Conservation																																																																				.	.	.
Alig confidence										.																	.	.																																								.	.	.
Template Conservation										.																	.	.
Template Sequence		K	V	T	I	G	V	A	S	.	N	D	T	K	A	W	E	K	V	K	E	L	A	K	K	D	.	.	D	I	D	V	E	I	K	H	F	S	D	Y	N	L	P	N	K	A	L	N	D	G	D	I	D	M	N	A	F	Q	H	F	A	F	L	D	Q	Y	K	K	A	H	K	G	T	K	I	S	A	L	S	T	T
Template Known Secondary structure								S	S	.	S													G	G	G	.	.	T									S	S	T	T	S							T	T	S	S	S																		T	T
Template Predicted Secondary structure										.																	.	.
Template SS confidence
		40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																			.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	T	D	I	Q	P	T	Y	L	T	P	A
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.														.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.														.	.
Template Sequence		V	L	A	.	.	P	L	G	I	Y	S	D	K	I	K	D	V	K	.	.	K	V	K	D	G	A	K	V	V	I	P	N	D	V	S	N	Q	A	R	A	L	K	L	L	E	A	A	G	L	I	K	L	K	K	D	F	G	L	A	G	T	V	K	D	I	T	S	N	P	K	H	L	K	I	T	A	V	D	A	Q
Template Known Secondary structure					.	.							S	S		S		G	G	.	.	G			T	T								S														T	T	S					T	T			T	T			G	G	G					T	T									G	G
Template Predicted Secondary structure					.	.														.	.
Template SS confidence
		117	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.
Predicted Secondary structure																																				.	.	.																																			.	.
Query SS confidence																																				.	.	.																																			.	.
Query Sequence		D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	.	.	.	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	.	.	E	A	D	A	L	T	R
Query Conservation																																				.	.	.																																			.	.
Alig confidence								.	.																											.	.	.																			.																.	.
Template Conservation								.	.																																																.
Template Sequence		Q	T	A	R	A	L	.	.	S	D	V	D	I	A	V	I	N	N	G	V	A	T	K	A	G	K	D	P	K	N	D	P	I	F	L	E	K	S	N	S	D	A	V	K	P	Y	I	N	I	V	A	V	N	D	K	.	D	L	D	N	K	T	Y	A	K	I	V	E	L	Y	H	S	K	E	A	Q	K	A	L	Q
Template Known Secondary structure		G	T	T	G	G	G	.	.	G	T	S	S												T	T			T	T	T	S		S						S	S	G	G	G	G	G	G								G	G	.	G	T	T													S
Template Predicted Secondary structure								.	.																																																.
Template SS confidence
		193	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	R	E	Q	S	I	A	L	L	A	K	T	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		E	D	V	K	D	G	E	K	P	.	.	.	.	V	N	L	S	K	D	E	I	K	A	I	E	T	S	L	A
Template Known Secondary structure					T	T	S	S			.	.	.	.
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions