Job Description P75853 Confidence 100.00% Date Thu Jan 5 12:15:02 GMT 2012 Rank 5 Aligned Residues 294 % Identity 19% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		24	.	.	.	.	.	30	.	.	.								.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure												.	.	.	.	.	.	.																						.	.											.	.	.
Query SS confidence												.	.	.	.	.	.	.																						.	.											.	.	.
Query Sequence		S	S	P	E	A	L	R	I	G	Y	.	.	.	.	.	.	.	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	.	.	E	S	K	I	S	W	V	E	F	P	.	.	.	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A
Query Conservation												.	.	.	.	.	.	.																						.	.											.	.	.
Alig confidence												.	.	.	.	.	.	.																						.	.											.	.	.
Template Conservation
Template Sequence		E	D	L	K	V	V	R	I	A	S	V	A	T	N	V	G	G	K	T	V	Y	A	G	S	A	S	L	V	V	N	G	A	F	P	E	E	L	R	K	Q	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N	E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L
Template Known Secondary structure																	T	T						T								S	S								T	T										T	T												T	T									S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		N	A	S	K	P	T	V	Q	L	V	A	P	W	G	T	T	.	S	N	S	Y	L	V	V	P	K	N	S	T	A	K	S	I	K	D	L	K	G	K	K	I	A	L	H	R	G	R	P	W	E	L	A	F	S	N	L	L	Q	S	E	G	L	T	F	K	D	F	K	I	V	N	V	N	P	Q	V	G	A	A	A
Template Known Secondary structure					S													.									T	T					S	G	G	G	G	T	T	S						T	T	S	T												T	T			G	G	G	S
Template Predicted Secondary structure																		.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	.	.	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		L	A	S	G	T	V	D	G	F	F	S	L	F	D	S	Y	I	L	E	D	R	G	V	G	K	I	I	W	S	T	K	T	A	P	V	D	W	K	L	X	G	G	V	W	A	R	N	D	F	V	K	Q	N	P	E	I	T	Q	A	I	V	T	A	Y	L	K	S	V	H	W	V	A	Q	D	E	N	K	E	T	Y
Template Known Secondary structure					T	S	S	S					S	T	T							T	T	S							G	G	G	S		G	G	G	S																																			S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																											.	.	.	.
Query SS confidence			.																											.	.	.	.
Query Sequence		L	.	L	A	K	T	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	.	.	.	.	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R	L	V	P	K	K	V	D	I	R	Q	R	I	W	Q	P	T	Q	L	E	G	K	Q
Query Conservation			.																											.	.	.	.
Alig confidence			.																											.	.	.	.
Template Conservation
Template Sequence		I	R	E	Y	S	N	K	I	Y	P	E	S	V	N	R	R	E	Y	D	Q	D	N	V	S	W	R	Q	R	W	S	P	L	Y	D	V	A	L	Q	E	H	Y	R	K	A	V	A	Y	A	Q	A	S	G	L	T	R	T	Q	A	D	V	Q	Q	X	L	N	P	H	F	V	A	T	A	L	K
Template Known Secondary structure					T	S		T	T	S								T	T	T	T		S	S		T	T	G	G	G																						T	T	S		S	S								B		T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions