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Job DescriptionP75853
Confidence70.92%DateThu Jan 5 12:15:02 GMT 2012
Rank172Aligned Residues205
% Identity17%Templatec3rpwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40..... ....50.........60.........70.... .... .80.........
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Query Sequence  SPEALRIGYQKGSIGMVLAKS. HQLLEKRYPESKISWVEFPAGPQMLEALN. VGSI. . DLGSTGDIPPI. . . . . . . . . . .
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Template Sequence  QSNVVIXQDPGGGYGDALRKVXYDPFEKE. TGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIFDQETKLLGDCCLADID
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   28.30.........40.........50...... ...60.........70.........80.........90.........100......
 
   90.........100.........110........ .120....... ..130.........140........
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Query Sequence  . . . . . . . . . . FAQAAGADLVYVGVEPPKPKAEVILVAEN. . . . . SPIKTVADL. . . . . . KGHKVAFQKGSSSHNLLLRAL
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Template Sequence  YSKLSESAHKTLAAXPDNLKRKKGVALQVIGVGLVYNKDKFKGDKAPQTWADFWDVKKFPGRRCXPAWPRFTFEAALXAD
Template Known Secondary structure  GGGS
TS
GGGTTTTTS
TTSS

S
TTTS
S
SSSTTT
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   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   149150..... ....160.........170.........180.........190.........200.........210..
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Query Sequence  RQAGLKF. . . . . . . . . . . . . . . . TDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFY
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Template Sequence  GVTKDKLYPIDXDRALKKLKEIKPHVVKWWTTAAQPPQLILDGEADXCLAYTGSXSKLALEGAPIDLTFNQGFVYYDFFS
Template Known Secondary structure  T

TTS

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   187..190.........200.........210.........220.........230.........240.........250.........260......
 
   213......220.........230...
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Query Sequence  LAARPYAEKNGAFIQGVLATF
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Template Sequence  IPKG. . . APNYDNALKLLSWR
Template Known Secondary structure 
BTT...
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   267..270 .........280....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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