Job Description P75853 Confidence 94.76% Date Thu Jan 5 12:15:02 GMT 2012 Rank 134 Aligned Residues 206 % Identity 9% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G
Query Conservation
Alig confidence																																													.																							.	.	.	.	.	.
Template Conservation																																													.																							.	.	.	.	.	.
Template Sequence		Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	.	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	P	.	.	.	.	.	.	V	E	P	L	R	S	E	I
Template Known Secondary structure			S																T														T	T										G	.	G	G							T	S			S							S	S		.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																													.																							.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	.	.	.	.	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D
Query Conservation																		.	.	.	.
Alig confidence							.	.	.									.	.	.	.																																									.	.
Template Conservation							.	.	.																																																					.	.
Template Sequence		L	G	R	V	G	.	.	.	V	L	C	L	L	S	K	Q	H	P	L	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	.	.	L	R	A	Y	H	L	E	A	A	L	A	I	V	D	T	L	P	I
Template Known Secondary structure							.	.	.							T	T	S	G	G	G	S	S										S						S													T	S	S	S							.	.				S										T	T	S
Template Predicted Secondary structure							.	.	.																																																					.	.
Template SS confidence
		185	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		I	I	T	V	P	A	D	L	A	Y	L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	.	.	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E	E	C	S	R	L	I	A
Template Known Secondary structure																		T							S	S													G	G	.	.	G	T	T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions