Job Description P75853 Confidence 99.09% Date Thu Jan 5 12:15:02 GMT 2012 Rank 32 Aligned Residues 240 % Identity 14% Template c3o66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter Resolution 1.86 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.																																		.	.	.	.	.
Query SS confidence																																									.	.	.																																		.	.	.	.	.
Query Sequence		S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	.	.	.	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	.	.	.	.	.
Query Conservation																																									.	.	.																																		.	.	.	.	.
Alig confidence																																									.	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence		T	K	N	D	V	K	I	T	A	L	S	T	S	E	S	Q	I	I	S	H	X	L	R	L	L	I	E	H	D	T	H	G	K	I	K	P	T	L	V	N	N	L	G	S	S	T	I	Q	H	N	A	L	I	N	G	D	A	N	I	S	G	V	R	Y	N	G	T	D	L	T	G	A	L	K	E	A	P	I	K	D
Template Known Secondary structure												S	S																		T	T	T	S										S	S											T	S		S													T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
																		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	.	.	.	.	P	I	K	T	V	A	D	L	.	.	.	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.												.	.	.	.									.	.	.	.
Template Conservation																													.
Template Sequence		P	K	K	A	X	I	A	T	Q	Q	G	F	K	K	K	F	D	Q	T	F	F	D	S	Y	G	F	A	.	N	T	Y	A	F	X	V	T	K	E	T	A	K	K	Y	H	L	E	T	V	S	D	L	A	K	H	S	K	D	L	R	L	G	X	D	S	S	W	X	N	G	D	G	Y	E	G	F	K	K	E	Y	G
Template Known Secondary structure																		S								S		B	.																T		S	B	S	G	G	G	T	T	T	G	G	G							G	G	G					S
Template Predicted Secondary structure																													.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	.	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A
Query Conservation																																																														.
Alig confidence			.	.																																.	.																									.																.	.	.	.
Template Conservation			.	.																																.	.																																									.	.	.	.
Template Sequence		F	.	.	D	F	G	T	V	R	P	X	Q	I	G	L	V	Y	D	A	L	N	T	E	K	L	D	V	A	L	G	Y	S	T	D	.	.	G	R	I	A	A	Y	D	L	K	V	L	K	D	D	K	Q	F	F	P	P	Y	A	A	S	A	V	A	T	N	E	L	L	R	Q	H	P	E	L	K	T	.	.	.	.
Template Known Secondary structure			.	.			S							G	G	G							T	T	S		S						T	T		.	.						T	T					B		T	T			S				B														T					.	.	.	.
Template Predicted Secondary structure			.	.																																.	.																																									.	.	.	.
Template SS confidence
		192			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M	.	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R	L	V	P
Query Conservation																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.																						.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	N	K	L	T	G	K	I	S	T	S	E	X	Q	R	L	N	Y	E	A	D	G	K	G	K	E	P	.	.	.	.	.	.	.	.	A	V	V	A	E	E	F	L	K	K	H	H	Y	F	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T																T	S					.	.	.	.	.	.	.	.											T	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template SS confidence
																				264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.									.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions