Job Description P75853 Confidence 99.92% Date Thu Jan 5 12:15:02 GMT 2012 Rank 24 Aligned Residues 221 % Identity 10% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																			.																																						.	.	.
Query SS confidence																			.																																						.	.	.
Query Sequence		E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	.	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	.	.	.	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G
Query Conservation																			.																																						.	.	.
Alig confidence																			.										.	.										.																	.	.	.
Template Conservation																													.	.										.
Template Sequence		K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	H	.	.	G	F	D	V	K	T	T	A	L	.	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	K	Y	G	K	S	V	D	L	L	G
Template Known Secondary structure										S																		T	.	.	T									.											T	T	S	S	S								T	T	T	T								G	G	G
Template Predicted Secondary structure																													.	.										.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																																							.	.	.
Query SS confidence																											.	.	.	.																																							.	.	.
Query Sequence		V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	.	.	.	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	.	.	.	A	D	A	R	A	A	F	Q	Q	G
Query Conservation																											.	.	.	.																																							.	.	.
Alig confidence							.																				.	.	.	.																																							.	.	.
Template Conservation							.
Template Sequence		P	N	L	K	G	.	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P	S	S	S	G	A	M	T	V	A	L	G	E	A	I	K	Q	H
Template Known Secondary structure							.									T	T	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T																					T	T
Template Predicted Secondary structure							.
Template SS confidence
		398	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.																					.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	S	E
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	I	V	I	T	G	W	S	P	H	W	M	F	N	K	Y	D	L	K	Y	L	A	D	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A	Y	K	V	L	D	K	F	N	W	T	T	K	D	M	E	A	V	M	L	D	I	Q	N	G	K	T	P	E	E	A
Template Known Secondary structure											S		T					S						B		T	T		T	T												T	T																															T	T
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	N	W	I	K	D	H	Q	K	E	V	D	K	W	F
Template Known Secondary structure									T						G	G	G
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions