Job Description P75853 Confidence 98.39% Date Thu Jan 5 12:15:02 GMT 2012 Rank 60 Aligned Residues 216 % Identity 14% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.													.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.												.	.										.
Template Conservation																																									.	.										.
Template Sequence		R	G	E	L	R	V	G	L	E	P	G	Y	L	P	F	E	X	K	D	K	K	G	N	V	I	G	F	D	V	D	L	A	R	E	X	A	K	A	X	.	.	G	V	K	L	K	L	V	P	T	.	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	G	X	T	I	S	Q	E	R	N	L
Template Known Secondary structure			S								T	T	S	T	T	T					T	T	T				S														.	.	T									.		G	G	G							T	T	S		S				S	S		B							T
Template Predicted Secondary structure																																									.	.										.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q
Query Conservation
Alig confidence																.	.	.																																								.	.	.	.
Template Conservation																.	.	.																																								.	.	.	.
Template Sequence		R	V	N	F	V	E	P	Y	I	V	V	G	Q	S	.	.	.	L	L	V	K	K	G	L	E	K	G	V	K	S	Y	K	D	L	D	K	P	E	L	T	L	V	T	K	F	G	V	S	A	E	Y	A	A	K	R	L	.	.	.	.	F	K	N	A	K	L	K	T	Y	D	T	E	A	E	A	V	Q	E	V	L
Template Known Secondary structure		T	S				S		S							.	.	.					T	T	T	T	T	T			S	G	G	G	G			S	S							T	T	S										.	.	.	.		S	S	S						S	S
Template Predicted Secondary structure																.	.	.																																								.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K
Query Conservation
Alig confidence																																														.	.	.					.	.	.	.																		.
Template Conservation																																														.	.	.					.	.	.	.																		.
Template Sequence		N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	K	K	.	.	.	G	D	P	D	.	.	.	.	F	L	N	W	L	N	H	F	L	A	Q	I	K	H	D	G	S	.	Y	D	E	L	Y	E	R
Template Known Secondary structure		S	S	S	S																	T	T	T	T	T									S										T	.	.	.	T				.	.	.	.																S		.
Template Predicted Secondary structure																																														.	.	.					.	.	.	.																		.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.
		254	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	G	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	F	V	D	T	K
Template Known Secondary structure				T			S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions