Job Description P75853 Confidence 100.00% Date Thu Jan 5 12:15:02 GMT 2012 Rank 7 Aligned Residues 282 % Identity 11% Template c3ix1B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		E	S	S	P	E	A	L	R	I	G	Y	Q	K	G	.	.	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y
Query Conservation																.	.
Alig confidence																.	.																	.	.
Template Conservation																																		.	.
Template Sequence		A	L	E	T	V	E	V	M	L	D	W	Y	P	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	.	.	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K	D	L	P	V	V	S
Template Known Secondary structure											S	S	S	S		G	G	G									T	T					T	.	.	T									S	S	T	T								T	T	S		S															T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W
Query Conservation
Alig confidence									.																																																									.
Template Conservation									.																																																									.
Template Sequence		V	A	S	V	V	R	S	.	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	.	F	E	L	G	A	S	I	V	S	G	R	A	D	A	V
Template Known Secondary structure								S	.			B						T	T	T			S	S	G	G	G	G	T	T	S						S		T	T												T	T			G	G	G							T	.	T								T	T	S		S
Template Predicted Secondary structure									.																																																									.
Template SS confidence
		107	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		181	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure								.	.																		.	.	.
Query SS confidence								.	.																		.	.	.
Query Sequence		A	I	W	D	P	Y	.	.	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	.	.	.	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M
Query Conservation								.	.																		.	.	.
Alig confidence								.	.																		.	.	.
Template Conservation
Template Sequence		V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K	G	Y	E	W	M	V	E	N	P	D	E	A	L	N	V	L	L	T	N	Q
Template Known Secondary structure			S		B	T	T	T								T	T								G	G	G	T	T						S																																		S											T	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		256									.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	L	P	A	P	V	I	A	S	Y	L	D	H	R	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q	Q	Q	T	A	D	L	F	Y	E	N	R	L	V	P	K	K	V	D	I	R	Q	R	I
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	A	N	F	P	L	I	Q	E	V	E	E	E	S	L	S	I	L	L	E	K	M	E	N	P	N	G	P	F	G	G	Q	D	A	E	S	W	E	E	V	I	S	W	L	D	A	H	D	W	L	E	Q	P	V	V	A	E	D	A	F
Template Known Secondary structure			T	T	T	S																			S		S	S	S		T	B																	T	T			S	S								B
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions