Return to main results Retrieve Phyre Job Id

Job DescriptionP75853
Confidence100.00%DateThu Jan 5 12:15:02 GMT 2012
Rank2Aligned Residues291
% Identity58%Templatec3e4rA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  ESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG
Query Conservation        
 

          
   
       

 

            

  
  
               
     
 
Alig confidence 















































































Template Conservation 
     



       
 

   
 
     
  
             

  
  
               
     
 
Template Sequence  AAEPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVG
Template Known Secondary structure 



S
TT
TT
TTS
SSTTS
SSTT

Template Predicted Secondary structure 



























Template SS confidence 















































































   25....30.........40.........50.........60.........70.........80.........90.........100....
 
   103......110.........120.........130.........140.........150.........160.........170.........180..
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAI
Query Conservation            


   
 
    




 
                            
         

  
 


   
Alig confidence 















































































Template Conservation            
    

 
    

 

 
           
   
   

    
            

  
 


   
Template Sequence  WVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAI
Template Known Secondary structure 


GGGTT



SGGGGTT

TTSTT

GGGS

TT

S
Template Predicted Secondary structure 































Template SS confidence 















































































   105....110.........120.........130.........140.........150.........160.........170.........180....
 
   183......190.........200.........210.........220.........230.........240.........250.........260..
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  WDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVI
Query Conservation   

                                     

 
  
  
   
      

  
               
Alig confidence 















































































Template Conservation    
        
    
                       

 
  
  
   
       
 

               
Template Sequence  WDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRRYATAWGPFVQQVMGTLNQADGLLERDRAGSIKTLAQVSGLPPAVV
Template Known Secondary structure  TTTTSSTTS



TTT


Template Predicted Secondary structure 




















Template SS confidence 















































































   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   263......270.........280.........290.........300.........310...
Predicted Secondary structure 





















Query SS confidence 


















































Query Sequence  ASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQ
Query Conservation                         
   
 
   
 
   

    
     
Alig confidence 


















































Template Conservation                         
   
     
 
         
   
 
Template Sequence  ERTLAHRPPASVQPLSAQVIKAQQATADLFYAQRLLPKRVLVAPAVWRAPD
Template Known Secondary structure  T





B


TT
SSS



GGGB




Template Predicted Secondary structure 

























Template SS confidence 


















































   265....270.........280.........290.........300.........310.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions