Job Description P75853 Confidence 83.61% Date Thu Jan 5 12:15:02 GMT 2012 Rank 154 Aligned Residues 213 % Identity 12% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																											.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.
Query Sequence		F	A	V	A	A	E	S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	.	.	.	.	.	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q
Query Conservation																																																											.	.	.	.	.
Alig confidence																		.	.																																								.	.	.	.	.
Template Conservation																		.	.
Template Sequence		P	A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	.	.	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A	M	D	L	Q	V	K	L
Template Known Secondary structure				T	T			T	T									.	.		S																	T	T																							T	T			B		S					S
Template Predicted Secondary structure																		.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		93	.	.	.	.	.	.	100	.																	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	G	A	D	L	V	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	.	.	.	.	.	S	P	I	K	T	V	A	D	L	K	.	.	.	.	.	.	.	.	.	.	G	H	K	V	A	F	Q	K	G	S	S	S	H
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K	E	V	H	G	R	I	A	T	Y	D	I	E	R	S	G
Template Known Secondary structure				T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B										G	G	G		S	S	S					S											T					T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.											.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		N	L	L	L	R	A	L	R	Q	A	G	L	K	F	.	.	.	.	.	.	.	.	.	.	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	.	.	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G
Query Conservation																.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation
Template Sequence		V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I	V	L	P	K	D	Y	T	V	V	M	S
Template Known Secondary structure															T	T											T	T					S											T	T	S		S															T	T		T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		R	I	G	L	V	P	E	A	.	.	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M
Template Known Secondary structure								T	T	.	.	B	S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		263	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions