Job Description P75853 Confidence 98.99% Date Thu Jan 5 12:15:02 GMT 2012 Rank 36 Aligned Residues 217 % Identity 17% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																.	.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence																													.	.																.	.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	.	.	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	.	.	.	.	.	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	.	.	.	.	.	.	.	.
Query Conservation																													.	.																.	.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence																													.	.																.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	Y	D	L	K	F	G	M	N	A	G	T	S	S	N	E	Y	K	A	A	E	M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A	V
Template Known Secondary structure											S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																													90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.												.	.
Template Conservation																																												.	.												.	.
Template Sequence		F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F	G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	.	.	Y	N	G	T	R	Q	T	T	S	N	R	.	.	A	I	N	S	I	A	D	M	K	G	L	K	L	R	V	P	N	A	A	T	N	L	A
Template Known Secondary structure		G	G	S	T	T	T	S		S										S	S																							.	.										S	S	.	.				S	G	G	G	G	T	T							S
Template Predicted Secondary structure																																												.	.												.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																																																			.
Template Conservation						.	.	.	.	.	.	.	.	.																																																			.
Template Sequence		Y	A	K	Y	.	.	.	.	.	.	.	.	.	V	G	A	S	P	T	P	M	A	F	S	E	V	Y	L	A	L	Q	T	N	A	V	D	G	Q	E	N	P	L	A	A	V	Q	A	Q	K	F	Y	E	V	Q	K	F	L	A	M	T	N	H	I	.	L	N	D	Q	L	Y	L	V	S	N	E	T	Y	K	E	L
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	T	T								G	G	G							T	T	S	S	S												T	T	G	G	G	S		S									.														T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																			.
Template SS confidence
		157	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	A	F	I	Q	G	V	L	A	.	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	M
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		P	E	D	L	Q	K	V	V	K	D	A	A	E	N	A	A	K	Y	H	T	K	L	F	V	D	G	E	K	D	L	V	T	F	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions