Phyre 2 alignment of P75853 with c2zzxD

Job Description P75853
Confidence 98.95% Date Thu Jan 5 12:15:02 GMT 2012

Rank 39 Aligned Residues 262

% Identity 14% Template c2zzxD_

PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate

Resolution 1.75 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.															.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.															.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	.	.	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	.	.	.	.	.	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.															.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence																											.	.															.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	Y	R	W	R	I	Q	T	A	W	D	A	G	T	V	G	Y	S	L	F	Q	K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L
Template Known Secondary structure									S	S		T	T	S																	T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	3033	.	.	.	.	.	.	3040	.	.	.	.	.	.	.	.	.	3050	.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.

																											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence	S	S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	I	H	S	.	.	.	.	K	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	P	G	G	M	I	A	E	V	F
Template Known Secondary structure	S			T	T	S			S										T	S	S											T	T	T																	.	.	.	.	S	S				S	G	G	G	G	T	T							S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
	3113	.	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.	3160	.	.					.	.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.	3180	.	.	.	.	.	.	.	.

	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																						.																											.	.	.	.	.	.
Query SS confidence																																						.																											.	.	.	.	.	.
Query Sequence	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	.	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	.	.	.	.	.	.	Q	T	G	S	F	Y	L	A	A	R
Query Conservation																																						.																											.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.																												.																											.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	A	A	A	G	A	S	T	V	L	L	P	G	G	E	V	Y	P	A	L	E	R	G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A	I	H	Q	P	V	D	L	M	D	F	T	I	N	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.			T	T								G	G	G							T	T	S		S					S								T	T													T	T	S	S		S	S		S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											3189	3190	.	.	.	.	.	.	.	.	.	3200	.	.	.	.	.	.	.	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.	.	.

	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																								.	.	.	.																.	.
Query SS confidence																.	.	.	.	.																								.	.	.	.																.	.
Query Sequence	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	.	.	.	.	.	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A	K	T	.	.	.	.	M	G	L	P	A	P	V	I	A	S	Y	L	D	H	R	.	.	P	P	T	T	I	K	P	V	N	A	E	V	A	A	L	Q
Query Conservation																.	.	.	.	.																								.	.	.	.																.	.
Alig confidence																.	.	.	.	.																								.	.	.	.																.	.
Template Conservation
Template Sequence	N	R	W	R	S	L	P	K	P	L	Q	E	R	F	I	A	A	V	H	E	Y	S	W	I	H	Y	A	G	I	Q	K	A	N	L	E	A	W	P	K	Y	R	Q	A	G	V	E	V	I	R	L	S	N	E	D	V	R	K	F	R	R	L	A	I	P	I	W	F	K	W	A	K	M	D	K	Y	S	R	E	A	F
Template Known Secondary structure						S																																					T	T																											T	T	S
Template Predicted Secondary structure
Template SS confidence
	3259	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320	.	.	.	.	.	.	.	.	.	3330	.	.	.	.	.	.	.	.

	286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	Q	T	A	D	L	F	Y	E	N	R	L	V	P	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	S	Q	L	E	Y	M	K	G	I	G	Y	V	T	D	E
Template Known Secondary structure										T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
	3339	3340	.	.	.	.	.	.	.	.	.	3350	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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