Job Description P75853 Confidence 96.97% Date Thu Jan 5 12:15:02 GMT 2012 Rank 107 Aligned Residues 218 % Identity 16% Template c2yjpB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae Resolution 2.26 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.													.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	V	A	A	E	S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	V	A	A	I	K	E	K	G	V	I	R	I	G	V	F	G	D	K	P	P	F	G	Y	V	D	A	N	G	K	N	Q	G	F	D	V	E	I	A	K	D	L	A	K	D	L	L	G	S	P	D	K	V	E	F	V	L	T	E	A	A	N	R	V	E	Y	V	R	S	G	K	V	D	L	I	L	A	N	F
Template Known Secondary structure											T								S			T	T	T					T	T	S				S															S	S	G	G	G								G	G	G							T	T	S		S				S	S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P
Query Conservation
Alig confidence					.	.	.	.	.																																																									.	.	.	.	.	.
Template Conservation					.	.	.	.	.																																																									.	.	.	.	.	.
Template Sequence		T	Q	T	.	.	.	.	.	P	E	R	A	E	A	V	D	F	A	D	P	Y	M	K	V	A	L	G	V	V	S	P	K	N	K	P	I	T	D	M	A	Q	L	K	D	Q	T	L	L	V	N	K	G	T	T	A	D	A	F	F	T	K	S	H	P	.	.	.	.	.	.	E	V	K	L	L	K	F	D	Q	N
Template Known Secondary structure		B			.	.	.	.	.	T	T	G	G	G	T					S													T	T	S				S	G	G	G	T	T	T	S						T	T	S											T	.	.	.	.	.	.	T	S						S	S
Template Predicted Secondary structure					.	.	.	.	.																																																									.	.	.	.	.	.
Template SS confidence
		119	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E
Query Conservation
Alig confidence																																																				.	.	.	.						.	.	.	.																.
Template Conservation																																																				.	.	.	.						.	.	.	.																.
Template Sequence		T	E	T	F	D	A	L	K	D	G	R	G	V	A	L	A	H	D	N	A	L	L	W	A	W	A	K	E	N	P	N	F	E	V	A	I	G	N	L	G	P	A	E	F	I	A	P	A	V	Q	.	.	.	.	K	G	N	A	D	.	.	.	.	L	L	N	W	V	N	G	E	I	A	A	M	K	K	D	.	G
Template Known Secondary structure										T	T	S	S	S																	T	T								S	S	S										.	.	.	.	T	T				.	.	.	.																.	S
Template Predicted Secondary structure																																																				.	.	.	.						.	.	.	.																.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.					.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.
		246	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	I	A	L	L	A	K	T	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	K	A	A	Y	E	K	T	L
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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