Job Description P75853 Confidence 99.54% Date Thu Jan 5 12:15:02 GMT 2012 Rank 27 Aligned Residues 221 % Identity 12% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		S	S	P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	.	.	.	.	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V
Query Conservation																																																														.	.	.	.
Alig confidence																															.											.																				.	.	.	.
Template Conservation																															.											.
Template Sequence		E	S	C	G	T	V	R	F	S	D	V	G	W	T	D	I	T	A	T	T	A	T	A	T	T	I	L	E	A	.	L	G	Y	E	T	D	V	K	V	L	.	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E
Template Known Secondary structure					S								S		T	T															.	T	T									.						T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure																															.											.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.									.	.	.	.	.	.	.
Query SS confidence																						.	.	.									.	.	.	.	.	.	.
Query Sequence		Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	.	.	.	P	I	K	T	V	A	D	L	.	.	.	.	.	.	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R
Query Conservation																						.	.	.									.	.	.	.	.	.	.
Alig confidence										.												.	.	.									.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		T	V	R	E	N	L	A	G	.	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L
Template Known Secondary structure										.															T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure										.
Template SS confidence
		109	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.										230	.
Predicted Secondary structure			.	.	.	.																																				.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.																																				.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	.	.	.	.	.	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	.	.	.	.	.	.	.	.	.	L	A
Query Conservation			.	.	.	.																																				.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.																		.	.																	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	P	.	.	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N	L	S	F	S	L	Q	M	E	N
Template Known Secondary structure								T	T	T	T										S	S	G	.	.	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	M	G	K	I	L	N	D	G	E	D	P	E	K	A	A	A
Template Known Secondary structure					T	T	T	S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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